Table III.
Annotation of mutations and their impact in the SARS-CoV-2
| Sample id | GeneName | Gene Id | Transcript Id | BioType | Variants Impact |
Variants Effect |
|||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| HIGH | LOW | MOD | FS | MS | SYN | SG | |||||
| SJHCO | N | GU280_gp10 | GU280_gp10 | Protein Coding | 2 | 1 | 1 | 2 | |||
| ORF1ab | GU280_gp01 | GU280_gp01 | Protein Coding | 1 | 1 | 1 | 1 | ||||
| ORF1ab | GU280_gp01 | GU280_gp01.2 | Protein Coding | 1 | 1 | 1 | 1 | ||||
| ORF1ab | GU280_gp01 | YP_009725299.1 | Protein Coding | 1 | 1 | 1 | 1 | ||||
| ORF1ab | GU280_gp01 | YP_009742610.1 | Protein Coding | 1 | 1 | 1 | 1 | ||||
| ORF3a | GU280_gp03 | GU280_gp03 | Protein Coding | 1 | 1 | 1 | 1 | ||||
| SJHCW | ORF1ab | GU280_gp01 | GU280_gp01 | Protein Coding | 1 | 1 | 1 | 1 | |||
| ORF1ab | GU280_gp01 | GU280_gp01.2 | Protein Coding | 1 | 1 | 1 | 1 | ||||
| ORF1ab | GU280_gp01 | YP_009725303.1 | Protein Coding | 1 | 1 | ||||||
| ORF1ab | GU280_gp01 | YP_009725304.1 | Protein Coding | 1 | 1 | ||||||
| ORF1ab | GU280_gp01 | YP_009742614.1 | Protein Coding | 1 | 1 | ||||||
| ORF1ab | GU280_gp01 | YP_009742615.1 | Protein Coding | 1 | 1 | ||||||
| SJHVL | N | GU280_gp10 | GU280_gp10 | Protein Coding | 1 | 1 | |||||
| KGF | ORF1ab | GU280_gp01 | GU280_gp01 | Protein Coding | 1 | 1 | |||||
| ORF1ab | GU280_gp01 | YP_009725308.1 | Protein Coding | 1 | 1 | ||||||
| MKHCW | N | GU280_gp10 | GU280_gp10 | Protein Coding | 1 | 1 | 1 | 1 | |||
| MKHE | ORF3a | GU280_gp03 | GU280_gp03 | Protein Coding | 1 | 1 | |||||
| MKHL2 | S | GU280_gp02 | GU280_gp02 | Protein Coding | 2 | 2 | |||||
| MKHL1 | ORF1ab | GU280_gp01 | GU280_gp01 | Protein Coding | 1 | 1 | |||||
| ORF1ab | GU280_gp01 | GU280_gp01.2 | Protein Coding | 1 | 1 | ||||||
| ORF1ab | GU280_gp01 | YP_009725299.1 | Protein Coding | 1 | 1 | ||||||
| ORF1ab | GU280_gp01 | YP_009742610.1 | Protein Coding | 1 | 1 | ||||||
| Total | 2 | 15 | 16 | 1 | 16 | 15 | 1 | ||||
Mod-Moderate; FS-Frameshift; MS-Missense; SG-Stop Gained; SYN-Synonymous.