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. Author manuscript; available in PMC: 2021 Dec 28.
Published in final edited form as: Clin Cancer Res. 2020 Oct 27;27(1):120–130. doi: 10.1158/1078-0432.CCR-20-2403

Figure 2:

Figure 2:

Sample-wise and Gene-wise correlation of paired FF/FFPE Samples: Figure- 2A: Histogram of sample-wise Spearman correlation of paired FF/FFPE values across all 472 CMS genes on Nanostring assay, with threshold of 0.75 marked with red vertical line. Figure-2B and 2C: Association of sample-wise FF/FFPE with RNA Quality: Scatterplot of gene-specific Spearman correlation of FF/FFPE vs. RNA quality of FF samples (2B, based on RIN) and FFPE samples (2C, based on % with 200nt). Figure-2D: Histogram of gene-wise Spearman correlation of paired FF/FFPE values based on samples with sample-wise correlation > 0.75, with thresholds to determine the top 100 and top 200 genes indicated by red and blue vertical lines, respectively.