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. 2021 Dec 21;2(12):100455. doi: 10.1016/j.xcrm.2021.100455
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

InVivoPlus anti-mouse 4-1BB (CD137) BioXCell CAT# BP0239, RRID:AB_2894814
InVivoPlus anti-mouse PD-1 (CD279) BioXCell CAT#: BP0146, RRID:AB_2894808
InVivoPlus anti-mouse CTLA-4 (CD152) BioXCell CAT#: BP0164, RRID:AB_2894809
InVivoPlus anti-mouse LAG-3 BioXCell CAT#: BP0174, RRID:AB_2894812
InVivoPlus anti-mouse TIM-3 (CD366) BioXCell CAT#: BP0115, RRID:AB_2894805
InVivoPlus anti-mouse CD4 BioXCell CAT#: BP0003-1, RRID:AB_2891358
InVivoPlus anti-mouse CD8α BioXCell CAT#: BP0061, RRID:AB_2891359
InVivoPlus anti-mouse NK1.1 BioXCell CAT#: BE0036, RRID:AB_1107737
Recombinant Alexa Fluor® 405 Anti-Glucose Transporter GLUT1 antibody Abcam CAT#: ab210438, RRID:AB_2895210
Glut4 Antibody [Alexa Fluor® 647] Novus Biologicals Cat#: NBP1-49533AF647, RRID:AB_2895213
Anti-Ovalbumin antibody Abcam Cat#: ab186717, RRID:AB_2895212
Anti-Proteasome 20S LMP7 antibody Abcam Cat#: ab3329, RRID:AB_303708
FoxO4 Antibody Cell Signaling Technology Cat#: 9472, RRID:AB_10831833
HRP Anti-beta Actin antibody [AC-15] Abcam Cat#: ab49900, RRID:AB_867494
Recombinant Anti-PSMB10/MECL1 antibody Abcam Cat#: ab183506, RRID:AB_2895211
Recombinant Anti-Ubiquitin (linkage-specific K48) antibody [EP8589] Abcam Cat#: ab140601, RRID:AB_2783797
PE Rat Anti-Mouse CD105 BD Biosciences CAT#: 562759, RRID:AB_2737774
PE-Cy7 Rat Anti-Mouse CD8a BD Biosciences CAT#: 552877, RRID:AB_394506
APC Mouse Anti-Rat CD90/Mouse CD90.1 BD Biosciences CAT#: 561409, RRID:AB_10683163
APC Rat Anti-Mouse CD274 BD Biosciences Cat#: 564715, RRID:AB_2687479
APC Rat Anti-Mouse CD44 BD Biosciences Cat#: 559250, RRID:AB_398661
APC-Cy7 Rat Anti-Mouse CD45 BD Biosciences Cat#: 557659, RRID:AB_396774
BV421 Mouse Anti-Mouse H-2K[b] BD Biosciences Cat#: 562942, RRID:AB_2737908
PE Hamster Anti-Mouse CD80 BD Biosciences Cat#: 553769, RRID:AB_395039
PE Mouse Anti-Mouse H-2D[b] BD Biosciences Cat#: 553574, RRID:AB_394932
PE Rat Anti-Mouse CD73 BD Biosciences Cat#: 550741, RRID:AB_393860
PE Rat Anti-Mouse CD86 BD Biosciences Cat#: 5536922, RRID:AB_394994
PE anti-mouse H-2Kb bound to SIINFEKL Antibody BioLegend Cat# 141604, 141603, RRID:AB_10895905, RRID:AB_10897938
FoxO1 (C29H4) Rabbit mAb Cell Signaling Technology Cat#: 2880s, RRID:AB_2106495
HIF-1α Antibody Cell Signaling Technology Cat #: 3716, RRID:AB_2116962
K63-linkage Specific Polyubiquitin (D7A11) Rabbit mAb Cell Signaling Technology Cat#: 5621s, RRID:AB_10827985
p38 MAPK Antibody Cell Signaling Technology Cat#: 9212s, RRID:AB_330713
P-Akt (Ser473) Antibody Cell signaling Technology Cat#: #9271, RRID:AB_329825
Phospho-FoxO1 (Ser256) Antibody Cell signaling Technology Cat#: 9461, RRID:AB_329831
P-p38 MAPK (Thr180/Tyr182) Antibody Cell signaling Technology Cat#: 4511, RRID:AB_2139682

Chemicals, peptides, and recombinant proteins

Methylmalonate Cayman Chemical Item No. 14885
SIINFEKLE GenScript N/A
Chloroquine InvivoGen Cat#: tlrl-chq
CLODRONATE LIPOSOMES & CONTROL LIPOSOMES (PBS) LIPOSOMA CSKU: CP-005-005
Recombinant Murine GM-CSF PeproTech Cat#: 315-03
Recombinant Murine IFN-γ PeproTech Cat#: 315-05
XenoLight D-Luciferin - K+ Salt Bioluminescent Substrate PerkinElmer Cat#: 122799
2-Deoxy-D-glucose Sigma-Aldrich Cat#: D8375-1G
Accutase® solution Sigma-Aldrich Cat#: A6964
Albumin from chicken egg white Sigma-Aldrich Cat#: A5503
Alizarin Red S Sigma-Aldrich Cat#: A5533-25G
Lipopolysaccharides from Escherichia coli O111:B4 Sigma-Aldrich Cat#: L2630-10MG
Oil Red O Sigma-Aldrich Cat#: O0625-25G
CellTrace Violet Cell Proliferation Kit, for flow cytometry ThermoFisher Scientific Cat#: C34557
DQ ovalbumin ThermoFisher Scientific Cat#: D12053
Lucifer Yellow CH ThermoFisher Scientific Cat#: L1177
MitoSOX Red Mitochondrial Superoxide Indicator, for live-cell imaging ThermoFisher Scientific Cat#: M36008
MitoTracker Deep Red FM ThermoFisher Scientific Cat#: M22426
MitoTracker Green FM ThermoFisher Scientific Cat#: M7514
Ovalbumin, Alexa Fluor 647 Conjugate ThermoFisher Scientific Cat#: O34784
pHrodo Green Dextran, 10,000 MW, for Endocytosis ThermoFisher Scientific Cat# P35368
pHrodo Red AM Intracellular pH Indicator ThermoFisher Scientific Cat#: P35372
FTY720 Tocris N/A

Critical commercial assays

RNeasy Mini Kit (50) QIAGEN Cat#: 74104
Mouse IFN-gamma DuoSet ELISA R&D systems Cat#: DY485-05
Mouse IL-12 p70 Quantikine ELISA Kit R&D systems Cat#: M1270
Mouse IL-6 Quantikine ELISA Kit R&D systems Cat#: M6000B
Mouse Chemokine Array C1 RayBiotech Cat#: AAM-CHE-1-2
EasySep Mouse CD8a Positive Selection Kit StemCell Technologies Cat #: 18753
EasySep Mouse CD8a Positive Selection Kit II StemCell Technologies Cat#:18953

Deposited data

RNA-seq data for ctl MSCs and MSC-IPr GEO GEO: GSE183055

Experimental models: Cell lines

Mouse: A20 ATCC CAT# TIB-208, RRID:CVCL1940
Mouse: B16F0 ATCC ATCC Cat# CRL-6322, RRID:CVCL0604
Mouse: E.G7-OVA [derivative of EL4] ATCC ATCC Cat# CRL-2113, RRID:CVCL3505
Mouse: EL4 ATCC Cat# TIB-39, RRID:CVCL0255
293-GP2 Clontech RRID:CVCLWI48

Experimental models: Organisms/strains

Mouse: BALB/cAnCrl Charles River Strain code: 028
Mouse: C57BL/6NCrl Charles River Strain code: 027
Mouse: OT1 (C57BL/6-Tg(TcraTcrb)1100Mjb/J) The Jackson Laboratory Strain code: 003831
Mouse: Batf3-deficient mouse (B6.129S(C)-Batf3tm1Kmm/J) The Jackson Laboratory Strain code: 013755
Mouse: MHCI-deficient mouse (B6.129P2-H2-K1tm1Bpe H2-D1tm1Bpe/DcrJ) The Jackson Laboratory Strain code: 019995

Recombinant DNA

Murine IPr construct This paper n/a

Software and algorithms

FlowJo v10 FlowJo https://www.flowjo.com/solutions/flowjo/downloads
Prism-GraphPad GraphPad Software https://www.graphpad.com/scientific-software/prism/
Software used for statistical analysis GraphPad Software https://www.graphpad.com/scientific-software/prism/