Antibodies |
|
InVivoPlus anti-mouse 4-1BB (CD137) |
BioXCell |
CAT# BP0239, RRID:AB_2894814 |
InVivoPlus anti-mouse PD-1 (CD279) |
BioXCell |
CAT#: BP0146, RRID:AB_2894808 |
InVivoPlus anti-mouse CTLA-4 (CD152) |
BioXCell |
CAT#: BP0164, RRID:AB_2894809 |
InVivoPlus anti-mouse LAG-3 |
BioXCell |
CAT#: BP0174, RRID:AB_2894812 |
InVivoPlus anti-mouse TIM-3 (CD366) |
BioXCell |
CAT#: BP0115, RRID:AB_2894805 |
InVivoPlus anti-mouse CD4 |
BioXCell |
CAT#: BP0003-1, RRID:AB_2891358 |
InVivoPlus anti-mouse CD8α |
BioXCell |
CAT#: BP0061, RRID:AB_2891359 |
InVivoPlus anti-mouse NK1.1 |
BioXCell |
CAT#: BE0036, RRID:AB_1107737 |
Recombinant Alexa Fluor® 405 Anti-Glucose Transporter GLUT1 antibody |
Abcam |
CAT#: ab210438, RRID:AB_2895210 |
Glut4 Antibody [Alexa Fluor® 647] |
Novus Biologicals |
Cat#: NBP1-49533AF647, RRID:AB_2895213 |
Anti-Ovalbumin antibody |
Abcam |
Cat#: ab186717, RRID:AB_2895212 |
Anti-Proteasome 20S LMP7 antibody |
Abcam |
Cat#: ab3329, RRID:AB_303708 |
FoxO4 Antibody |
Cell Signaling Technology |
Cat#: 9472, RRID:AB_10831833 |
HRP Anti-beta Actin antibody [AC-15] |
Abcam |
Cat#: ab49900, RRID:AB_867494 |
Recombinant Anti-PSMB10/MECL1 antibody |
Abcam |
Cat#: ab183506, RRID:AB_2895211 |
Recombinant Anti-Ubiquitin (linkage-specific K48) antibody [EP8589] |
Abcam |
Cat#: ab140601, RRID:AB_2783797 |
PE Rat Anti-Mouse CD105 |
BD Biosciences |
CAT#: 562759, RRID:AB_2737774 |
PE-Cy7 Rat Anti-Mouse CD8a |
BD Biosciences |
CAT#: 552877, RRID:AB_394506 |
APC Mouse Anti-Rat CD90/Mouse CD90.1 |
BD Biosciences |
CAT#: 561409, RRID:AB_10683163 |
APC Rat Anti-Mouse CD274 |
BD Biosciences |
Cat#: 564715, RRID:AB_2687479 |
APC Rat Anti-Mouse CD44 |
BD Biosciences |
Cat#: 559250, RRID:AB_398661 |
APC-Cy7 Rat Anti-Mouse CD45 |
BD Biosciences |
Cat#: 557659, RRID:AB_396774 |
BV421 Mouse Anti-Mouse H-2K[b] |
BD Biosciences |
Cat#: 562942, RRID:AB_2737908 |
PE Hamster Anti-Mouse CD80 |
BD Biosciences |
Cat#: 553769, RRID:AB_395039 |
PE Mouse Anti-Mouse H-2D[b] |
BD Biosciences |
Cat#: 553574, RRID:AB_394932 |
PE Rat Anti-Mouse CD73 |
BD Biosciences |
Cat#: 550741, RRID:AB_393860 |
PE Rat Anti-Mouse CD86 |
BD Biosciences |
Cat#: 5536922, RRID:AB_394994 |
PE anti-mouse H-2Kb bound to SIINFEKL Antibody |
BioLegend |
Cat# 141604, 141603, RRID:AB_10895905, RRID:AB_10897938 |
FoxO1 (C29H4) Rabbit mAb |
Cell Signaling Technology |
Cat#: 2880s, RRID:AB_2106495 |
HIF-1α Antibody |
Cell Signaling Technology |
Cat #: 3716, RRID:AB_2116962 |
K63-linkage Specific Polyubiquitin (D7A11) Rabbit mAb |
Cell Signaling Technology |
Cat#: 5621s, RRID:AB_10827985 |
p38 MAPK Antibody |
Cell Signaling Technology |
Cat#: 9212s, RRID:AB_330713 |
P-Akt (Ser473) Antibody |
Cell signaling Technology |
Cat#: #9271, RRID:AB_329825 |
Phospho-FoxO1 (Ser256) Antibody |
Cell signaling Technology |
Cat#: 9461, RRID:AB_329831 |
P-p38 MAPK (Thr180/Tyr182) Antibody |
Cell signaling Technology |
Cat#: 4511, RRID:AB_2139682 |
|
Chemicals, peptides, and recombinant proteins |
|
Methylmalonate |
Cayman Chemical |
Item No. 14885 |
SIINFEKLE |
GenScript |
N/A |
Chloroquine |
InvivoGen |
Cat#: tlrl-chq |
CLODRONATE LIPOSOMES & CONTROL LIPOSOMES (PBS) |
LIPOSOMA |
CSKU: CP-005-005 |
Recombinant Murine GM-CSF |
PeproTech |
Cat#: 315-03 |
Recombinant Murine IFN-γ |
PeproTech |
Cat#: 315-05 |
XenoLight D-Luciferin - K+ Salt Bioluminescent Substrate |
PerkinElmer |
Cat#: 122799 |
2-Deoxy-D-glucose |
Sigma-Aldrich |
Cat#: D8375-1G |
Accutase® solution |
Sigma-Aldrich |
Cat#: A6964 |
Albumin from chicken egg white |
Sigma-Aldrich |
Cat#: A5503 |
Alizarin Red S |
Sigma-Aldrich |
Cat#: A5533-25G |
Lipopolysaccharides from Escherichia coli O111:B4 |
Sigma-Aldrich |
Cat#: L2630-10MG |
Oil Red O |
Sigma-Aldrich |
Cat#: O0625-25G |
CellTrace Violet Cell Proliferation Kit, for flow cytometry |
ThermoFisher Scientific |
Cat#: C34557
|
DQ ovalbumin |
ThermoFisher Scientific |
Cat#: D12053
|
Lucifer Yellow CH |
ThermoFisher Scientific |
Cat#: L1177 |
MitoSOX Red Mitochondrial Superoxide Indicator, for live-cell imaging |
ThermoFisher Scientific |
Cat#: M36008
|
MitoTracker Deep Red FM |
ThermoFisher Scientific |
Cat#: M22426
|
MitoTracker Green FM |
ThermoFisher Scientific |
Cat#: M7514 |
Ovalbumin, Alexa Fluor 647 Conjugate |
ThermoFisher Scientific |
Cat#: O34784
|
pHrodo Green Dextran, 10,000 MW, for Endocytosis |
ThermoFisher Scientific |
Cat# P35368
|
pHrodo Red AM Intracellular pH Indicator |
ThermoFisher Scientific |
Cat#: P35372
|
FTY720 |
Tocris |
N/A |
|
Critical commercial assays |
|
RNeasy Mini Kit (50) |
QIAGEN |
Cat#: 74104 |
Mouse IFN-gamma DuoSet ELISA |
R&D systems |
Cat#: DY485-05 |
Mouse IL-12 p70 Quantikine ELISA Kit |
R&D systems |
Cat#: M1270 |
Mouse IL-6 Quantikine ELISA Kit |
R&D systems |
Cat#: M6000B |
Mouse Chemokine Array C1 |
RayBiotech |
Cat#: AAM-CHE-1-2 |
EasySep Mouse CD8a Positive Selection Kit |
StemCell Technologies |
Cat #: 18753 |
EasySep Mouse CD8a Positive Selection Kit II |
StemCell Technologies |
Cat#:18953 |
|
Deposited data |
|
RNA-seq data for ctl MSCs and MSC-IPr |
GEO |
GEO: GSE183055
|
|
Experimental models: Cell lines |
|
Mouse: A20 |
ATCC |
CAT# TIB-208, RRID:CVCL1940 |
Mouse: B16F0 |
ATCC |
ATCC Cat# CRL-6322, RRID:CVCL0604 |
Mouse: E.G7-OVA [derivative of EL4] |
ATCC |
ATCC Cat# CRL-2113, RRID:CVCL3505 |
Mouse: EL4 |
ATCC |
Cat# TIB-39, RRID:CVCL0255 |
293-GP2 |
Clontech |
RRID:CVCLWI48 |
|
Experimental models: Organisms/strains |
|
Mouse: BALB/cAnCrl |
Charles River |
Strain code: 028 |
Mouse: C57BL/6NCrl |
Charles River |
Strain code: 027 |
Mouse: OT1 (C57BL/6-Tg(TcraTcrb)1100Mjb/J) |
The Jackson Laboratory |
Strain code: 003831 |
Mouse: Batf3-deficient mouse (B6.129S(C)-Batf3tm1Kmm/J) |
The Jackson Laboratory |
Strain code: 013755 |
Mouse: MHCI-deficient mouse (B6.129P2-H2-K1tm1Bpe H2-D1tm1Bpe/DcrJ) |
The Jackson Laboratory |
Strain code: 019995 |
|
Recombinant DNA |
|
Murine IPr construct |
This paper |
n/a |
|
Software and algorithms |
|
FlowJo v10 |
FlowJo |
https://www.flowjo.com/solutions/flowjo/downloads |
Prism-GraphPad |
GraphPad Software |
https://www.graphpad.com/scientific-software/prism/ |
Software used for statistical analysis |
GraphPad Software |
https://www.graphpad.com/scientific-software/prism/ |