Antibodies |
|
IgG |
Invitrogen |
A28175; RRID:AB_2536161
|
IgA |
Southern Biotech |
1040-02; RRID:AB_2794370
|
IgM |
BD PharMingen |
555782; RRID:AB_396117
|
C3 |
MP Biomedicals |
SKU 0855500; RRID:AB_2334931
|
Vangl1 |
Sigma |
SAB4503254; RRID:AB_10748043
|
VANGL1 |
ThermoFisher |
PA5-55231; RRID:AB_2649388
|
VANGL1 |
ThermoFisher |
PA5-98739; RRID:AB_2813352
|
VANGL2 |
ThermoFisher |
PA5-23207; RRID:AB_2540733
|
|
Biological samples |
|
Human PBMCs |
This study |
N/A |
Human kidney samples |
This study |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
MiScript RT Kit |
QIAGEN |
218160 |
SYBR Green |
QIAGEN |
204143 |
Tissue-Tek O.C.T. |
Sakura |
4583 |
2% osmium tetroxide |
Electron Microscopy Sciences, USA |
19100 |
Cacodylate buffer |
This study |
N/A |
TAAB epoxy |
TAAB Laboratory and Microscopy, U.K |
E049 |
|
Critical commercial assays |
|
Affymetrix 5.0 SNP Chip |
Affymetrix USA |
#901167 |
Taqman CN Assay |
Applied Biosystem, USA |
Hs05725015_cn |
ANA ELISA |
Alpha diagnostic |
5210 |
Total serum immunoglobulin |
BD Bioscience |
550487 |
Indiko Creatinine-detect |
ThermoFisher |
10015638 |
Albumin ELISA kit |
abcam |
Ab108792 |
|
Deposited data |
|
RNA sequences |
This study |
GEO: GSE188480
|
|
Experimental models: Organisms/strains |
|
C57BL/6 mice |
Charles River |
C57BL/6 |
Vangl1+/− |
KOMP |
EPD0164_3_G07 |
CD79aKen
|
Australian phenomics facility |
N/A |
Lyn−/− |
Australian phenomics facility |
N/A |
|
Oligonucleotides |
|
Vangl1 exon three F’ |
Integrated DNA Technologies |
GACACAAGTCACCCCGGAATA |
Vangl1 exon three R’ |
Integrated DNA Technologies |
TCCTCTGTCCGAGTAGAATCATT |
Vangl1 exon four F’ |
Integrated DNA Technologies |
CCGATCCTGTGGAGGGATGA |
Vangl1 exon four R’ |
Integrated DNA Technologies |
AAACACCCGTGGCATGTCA |
|
Software and algorithms |
|
Graphpad Rism 8.0 |
GraphPad Software CA, USA |
N/A |
FlowJo |
Tristar Inc, Stanford, US |
N/A |
RNA sequencing annotation |
M Field |
10.1371/journal.pone.0143199
|