TABLE 4.
The simple sequence repeat (SSR) types of the six CP genomes of Alpinia species.
SSR type | Repeat unit | Amount |
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A. galanga | A. kwangsiensis | A. hainanensis | A. oxyphylla | A. pumila | A. zerumbet | ||
Mono | A/T | 51 | 67 | 60 | 62 | 66 | 68 |
C/G | 4 | 2 | 0 | 1 | 2 | 3 | |
Di | AG/CT | 2 | 2 | 2 | 2 | 2 | 2 |
AT/AT | 26 | 31 | 27 | 35 | 30 | 24 | |
Tri | AAG/CTT | 3 | 3 | 3 | 3 | 2 | 3 |
ACT/AGT | 1 | 0 | 0 | 0 | 1 | 0 | |
AGG/CCT | 1 | 1 | 1 | 1 | 1 | 1 | |
AAT/ATT | 0 | 1 | 2 | 0 | 0 | 1 | |
Tetra | AAAC/GTTT | 1 | 1 | 1 | 1 | 1 | 1 |
AAAG/CTTT | 3 | 3 | 3 | 3 | 2 | 3 | |
AAAT/ATTT | 9 | 8 | 9 | 9 | 8 | 7 | |
AACT/AGTT | 1 | 1 | 1 | 1 | 1 | 1 | |
AATG/ATTC | 1 | 2 | 2 | 1 | 2 | 2 | |
AATT/AATT | 2 | 1 | 1 | 1 | 1 | 1 | |
ACAT/ATGT | 1 | 1 | 1 | 1 | 1 | 1 | |
Penta | AAAAT/ATTTT | 1 | 0 | 0 | 0 | 0 | 0 |
AATAT/ATATT | 3 | 0 | 0 | 0 | 0 | 0 | |
AAGGT/ACCTT | 0 | 1 | 0 | 0 | 0 | 0 | |
AAATT/AATTT | 0 | 0 | 0 | 1 | 0 | 0 | |
AACAT/ATGTT | 0 | 0 | 0 | 0 | 1 | 0 |