Table 1.
Summary mapping statistics and quality control per sample.
| Sample | Stage |
Raw
reads |
Clean
reads |
Mapped
reads |
% Mapped
reads |
% PCR duplication | % mtDNA | Final reads | % Final reads | Peaks | % Genome coverage | FRiP score |
Common
peaks |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C-6-2 | Adult | 72,033,458 | 70,474,823 | 63,697,320 | 88.43 | 52.17 | 3.21 | 23,933,263 | 33.23 | 19,210 | 0.22 | 0.08 | 10,023 |
| D-1-1 | Adult | 71,631,156 | 69,157,477 | 63,873,523 | 89.17 | 52.60 | 4.51 | 22,333,042 | 31.18 | 20,361 | 0.32 | 0.10 | |
| T-6-2 | Embryo | 79,271,255 | 77,542,120 | 71,035,710 | 89.61 | 35.57 | 1.11 | 30,401,792 | 38.35 | 23,618 | 0.33 | 0.10 | 11,360 |
| T-7-1 | Embryo | 83,237,472 | 83,237,472 | 76,210,914 | 91.56 | 19.66 | 0.69 | 42,479,978 | 51.03 | 24,550 | 0.36 | 0.13 |
FRiP score means fraction of all mapped reads that fall into the called peak regions.