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. 2021 Dec 30;141:105163. doi: 10.1016/j.compbiomed.2021.105163

Table 4.

The TBE employing MM-PBSA method for the wild type and three predicted variants (kcal/mol).

MM/PBSA (replicate 1)
Complex vdW Elec EPB Total Binding Energy
Wild Type −87.61 ± 0.14 −616.56 ± 0.64 649.01 ± 45.23 −4.89 ± 0.56
N501I −100.38 ± 0.18 −602.41 ± 1.03 624.66 ± 41.54 −8.83 ± 1.28
N501T −88.86 ± 0.12 −639.22 ± 0.92 655.85 ± 42.02 −6.25 ± 0.93
N501V −84.19 ± 0.13 −581.68 ± 0.73 609.00 ± 39.19 −4.67 ± 0.44
MM/PBSA (replicate 2)
Complex vdW Elec EPB Total Binding Energy
Wild Type −87.61 ± 0.14 −616.56 ± 0.64 649.01 ± 45.23 −4.89 ± 0.56
N501I −88.83 ± 0.16 −615.37 ± 0.95 633.56 ± 43.67 −7.62 ± 1.11
N501T −87.41 ± 0.11 −590.31 ± 0.95 615.03 ± 40.05 −6.92 ± 0.98
N501V −92.44 ± 0.91 −617.64 ± 0.75 640.12 ± 44.61 −5.20 ± 0.68
MM/PBSA (replicate 3)
Complex vdW Elec EPB Total Binding Energy
Wild Type −87.61 ± 0.14 −616.56 ± 0.64 649.01 ± 45.23 −4.89 ± 0.56
N501I −87.69 ± 0.15 −620.33 ± 0.52 637.58 ± 42.27 −9.44 ± 1.43
N501T −75.57 ± 0.10 −607.87 ± 0.89 622.35 ± 41.67 −6.16 ± 1.04
N501V −84.85 ± 0.11 −611.72 ± 0.81 638.30 ± 43.54 −4.66 ± 0.42