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. Author manuscript; available in PMC: 2021 Dec 30.
Published in final edited form as: Nat Struct Mol Biol. 2020 Aug 24;27(11):1009–1016. doi: 10.1038/s41594-020-0481-x

Extended Data Table 1.

Sample name Dip1-Arp2/3-Actin Inactive Arp2/3
EMDB ID EMD-21502 EMD-21503
PDB ID 6W17 6W18
Microscope Talos Arctica Talos Arctica
Detector (Mode) Falcon 3EC, counting mode Falcon 3EC, counting mode
Voltage (kV) 200 200
Magnification (nominal) 92,000X 120,000X
Total electron fluence (e2) 36.35 44.34
Electron flux (e/pixel/sec) 0.76 0.85
Defocus range (µm) −1 – −1.75 −0.7 – −1.3
Pixel size (Å) 1.12 0.8757
Total exposure time (sec) 60 40
Total fractions/micrograph 45 62
Exposure per fraction (e2/fraction) 0.81 0.72
Micrographs collected (no.) 5,109 5,309
Total extracted particles (no.) 3,500,000 3,336,981
Refined particles (no.) 2,346,578 450,747
Final particles (no.) 110,433 112,170
Symmetry imposed C1 C1
Global Resolution (Å)
 FSC 0.5 (masked/unmasked) 4.4/6.5 4.6/8.3
 FSC 0.143 (masked/unmasked) 3.9/4.3 4.2/5.2
Local resolution range (Å) 3.5 – 5.5 3.9 – 6.0
Map Sharpening B factors (Å2) −45.12 −116.219
Model composition
Non-hydrogen atoms 27,399 12,727
Protein residues 3,483 1,854
Ligands 6 Mg2+, 2 ATP, 4 ADP, 5 Phalloidin Mg2+, 2 ATP
Refinement
R.m.s. deviations
 Bond lengths (Å) 0.004 0.004
 Bond angles (°) 0.967 0.983

Validation
EMRinger score 1.39 1.29
MolProbity score 1.65 1.42
Clashscore 5.67 4.66
Poor rotamers (%) 0.00 0.00
Cβ deviations (%) 0.00 0.00
Ramachandran plot
 Favored (%) 95.00 96.96
 Allowed (%) 5.00 3.04
 Disallowed (%) 0.00 0.00
CaBLAM outliers (%) 4.2 3.8