TABLE 3.

Total read count and average coverage for chromosomal and plasmid-located genes in E. hoffmannii WEB-1, A. hermannii WEB-2, and isogenic mutant A. hermannii WEB-3.

	Total read count			Average coverage (x)
Genes	E. hoffmannii WEB-1	A. hermannii WEB-2	A. hermannii WEB-3	E. hoffmannii WEB-1	A. hermannii WEB-2	A. hermannii WEB-3
Plasmid-located genes
repA	2,724	1,890	232	185.55	129.02	31.68
parA	1,873	1,262	194	179.23	120.55	37.08
traI	5,203	3,670	895	131.87	93.15	45.38
bla VIM–1	1,441	1,114	4,761	135.09	104.54	891.63
bla SHV–12	1,252	976	6,684	100.09	77.95	1,069.11
intI1	6,350	2,680	9,099	470.59	198.73	1,348.32
Chromosomal genes
dnaA	1,148	1,256	1,098	61.93	72.05	125.66
rpoB	4,810	4,868	1,496	85.62	90.95	55.79
recA	883	1,108	651	62.83	78.48	91.69
Glucose 6-phosphate dehydrogenase	1,199	1,304	952	37.44	66.37	96.92
gyrB	1,179	2,429	2,062	36.83	75.43	128.24
Coverage	E. hoffmannii WEB-1		A. hermannii WEB-2		A. hermannii WEB-3
Mean chromosome	56.93	± 20.41	76.66	± 9.17	99.66	± 29.53
Mean plasmid	165.55	± 29.33	114.24	± 18.75	38.05	± 6.90
Integrase	470.59		93.15		1,348.32
VIM-1	135.09		104.54		891.63
Ratio plasmid/chromosome	2.91		1.49		0.38
Ratio VIM-1/plasmid	0.82		0.92		23.44