Table 4.
Top downregulated mRNAs and lncRNAs
| ENTREZ ID | HGNC symbol |
Long name | Locus type |
logFC | p value |
|---|---|---|---|---|---|
| 169693 | TMEM252 | transmembrane protein 252 | mRNA | -2.1611 | 0.0331 |
| 5655 | KLK10 | kallikrein related peptidase 10 | mRNA | -1.7433 | 0.0010 |
| 5803 | PTPRZ1 | protein tyrosine phosphatase receptor type Z1 | mRNA | -1.7022 | 0.0120 |
| 727897 | MUC5B | mucin 5B, oligomeric mucus/gel-forming | mRNA | -1.6678 | 0.0421 |
| 79937 | CNTNAP3 | contactin associated protein like 3 | mRNA | -1.5039 | 0.0096 |
| 10752 | CHL1 | cell adhesion molecule L1 like | mRNA | -1.5027 | 0.0391 |
| 7103 | TSPAN8 | tetraspanin 8 | mRNA | -1.4535 | 0.0070 |
| 9723 | SEMA3E | semaphorin 3E | mRNA | -1.4216 | 0.0001 |
| 10964 | IFI44 L | interferon induced protein 44 like | mRNA | -1.3304 | 0.0416 |
| 5340 | PLG | plasminogen | mRNA | -1.3219 | 0.0499 |
| 145837 | DRAIC | downregulated RNA in cancer, inhibitor of cell invasion and migration | lncRNA | -1.9848 | 0.0392 |
| 100131825 | CADM3-AS1 | CADM3 antisense RNA 1 | lncRNA | -1.6197 | 0.0298 |
| 100506674 | MRPS30-DT | MRPS30 divergent transcript | lncRNA | -1.2230 | 0.0049 |
| 641364 | SLC7A11-AS1 | SLC7A11 antisense RNA 1 | lncRNA | -0.7862 | 0.0302 |
| 100506305 | LINC00958 | long intergenic non-protein coding RNA 958 | lncRNA | -0.6847 | 0.0448 |
| 100289410 | MCF2 L-AS1 | MCF2 L antisense RNA 1 | lncRNA | -0.6591 | 0.0414 |
| 386597 | RNF144A-AS1 | RNF144A antisense RNA 1 | lncRNA | -0.6095 | 0.0177 |
| 144481 | SOCS2-AS1 | SOCS2 antisense RNA 1 | lncRNA | -0.4608 | 0.0205 |
| 100134229 | KDM7A-DT | KDM7A divergent transcript | lncRNA | -0.4579 | 0.0344 |
DEGs were insignificant after multiple testing correction of the p value. Abbreviation “FC” refers to fold change of expression levels