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Running times for an analysis of a simulated binary trait with 442,769 genetic variants, varying the number of individuals (1000, 5000, 10,000, 20,000, 50,000, and 100,000), the model is run with two covariates (age and gender). The genetic data have an average depth of 1X. For each point the analysis was run three times and then used the mean running time. All analyses but the SNPTEST analysis were run in ANGSD.
