TABLE 2.
Gene | Symbol | Pattern | m6A level change | mRNA level change | |||||
---|---|---|---|---|---|---|---|---|---|
Chr | Peak start | Peak end | diff.FC | diff.p | log2(FC) | Qvalue | |||
ENSBTAG00000007860 | ASPM | Hypo_Down | 16 | 76,041,095 | 76,041,295 | −2.340 | 0.010 | −3.237 | 0.000 |
ENSBTAG00000007284 | CCNA1 | Hypo_Down | 12 | 25,110,778 | 25,110,878 | −2.405 | 0.000 | −5.692 | 0.000 |
ENSBTAG00000017048 | CENPJ | Hypo_Down | 12 | 36,496,130 | 36,496,355 | −4.685 | 0.000 | −2.497 | 0.000 |
ENSBTAG00000016547 | CEP57 | Hypo_Down | 15 | 14,448,587 | 14,448,637 | −4.879 | 0.000 | −3.235 | 0.000 |
ENSBTAG00000021769 | CUL3 | Hypo_Down | 2 | 112,587,000 | 112,587,325 | −3.625 | 0.000 | −3.316 | 0.000 |
ENSBTAG00000014711 | DBF4 | Hypo_Down | 4 | 32,288,748 | 32,288,948 | −2.824 | 0.007 | −3.584 | 0.000 |
ENSBTAG00000015541 | DLC1 | Hypo-Up | 27 | 23,915,744 | 23,915,994 | −2.733 | 0.000 | 2.021 | 0.000 |
ENSBTAG00000010069 | EGR1 | Hypo-Up | 7 | 49,829,976 | 49,830,126 | −2.566 | 0.007 | 2.527 | 0.000 |
ENSBTAG00000004953 | ELK4 | Hypo_Down | 16 | 3,375,597 | 3,375,847 | −2.808 | 0.000 | −2.929 | 0.000 |
ENSBTAG00000015981 | ETV1 | Hypo_Down | 4 | 22,100,027 | 22,100,077 | −2.966 | 0.011 | −2.703 | 0.000 |
ENSBTAG00000000569 | HES1 | Hypo-Up | 1 | 73,362,983 | 73,363,058 | −2.642 | 0.000 | 2.518 | 0.000 |
ENSBTAG00000010859 | HYLS1 | Hypo_Down | 29 | 29,255,406 | 29,255,531 | −3.612 | 0.000 | −2.760 | 0.000 |
ENSBTAG00000021187 | ID2 | Hypo-Up | 11 | 88,605,254 | 88,605,404 | −2.933 | 0.005 | 2.841 | 0.000 |
ENSBTAG00000046561 | LCORL | Hypo_Down | 6 | 37,403,775 | 37,403,825 | −6.199 | 0.001 | −2.257 | 0.000 |
ENSBTAG00000006844 | LEF1 | Hyper-Down | 6 | 17,083,863 | 17,084,113 | 3.340 | 0.000 | −3.079 | 0.000 |
ENSBTAG00000007678 | MKX | Hypo_Down | 13 | 36,892,590 | 36,892,815 | −2.628 | 0.017 | −4.774 | 0.000 |
ENSBTAG00000003650 | NR4A2 | Hypo_Down | 2 | 39,905,150 | 39,905,250 | −3.755 | 0.001 | −2.485 | 0.000 |
ENSBTAG00000014981 | OTUB2 | Hypo_Down | 21 | 58,656,844 | 58,657,069 | −4.620 | 0.000 | −4.883 | 0.000 |
ENSBTAG00000014153 | PKNOX1 | Hypo_Down | 1 | 143,202,058 | 143,202,108 | −2.699 | 0.000 | −2.689 | 0.000 |
ENSBTAG00000039552 | PLK4 | Hypo_Down | 17 | 29,786,990 | 29,787,090 | −6.151 | 0.000 | −3.003 | 0.000 |
ENSBTAG00000020192 | PPP2R5C | Hypo_Down | 21 | 66,815,607 | 66,815,782 | −2.345 | 0.000 | −3.238 | 0.000 |
ENSBTAG00000020262 | PSME4 | Hypo_Down | 11 | 36,573,366 | 36,573,416 | −2.082 | 0.028 | −3.020 | 0.000 |
ENSBTAG00000009498 | PTEN | Hypo_Down | 26 | 9,564,008 | 9,564,180 | −3.981 | 0.000 | −2.243 | 0.000 |
ENSBTAG00000014349 | RNF126 | Hypo_Down | 7 | 43,262,899 | 43,262,949 | −2.777 | 0.000 | −2.273 | 0.000 |
ENSBTAG00000034531 | RNF146B | Hypo_Down | 9 | 24,002,245 | 24,002,445 | −2.178 | 0.000 | −2.044 | 0.000 |
ENSBTAG00000017155 | TRIM32 | Hypo_Down | 8 | 105,886,129 | 105,886,329 | −2.293 | 0.000 | −2.669 | 0.000 |
ENSBTAG00000001499 | TRIM33 | Hypo_Down | 3 | 28,977,136 | 28,977,286 | −2.836 | 0.000 | −2.356 | 0.000 |
ENSBTAG00000020451 | USP1 | Hypo_Down | 3 | 83,118,601 | 83,118,801 | −2.842 | 0.000 | −2.755 | 0.000 |
ENSBTAG00000030453 | ZC3H14 | Hypo_Down | 10 | 100,267,705 | 100,267,930 | −3.124 | 0.000 | −2.682 | 0.000 |
ENSBTAG00000033268 | ZFHX4 | Hypo_Down | 14 | 40,040,613 | 40,040,713 | −2.826 | 0.012 | −2.833 | 0.000 |
Chr indicates the chromosome of cattle; diff.FC represents the differential log2 fold change estimates; diff.p indicates the differential p-values; FC represents Fold changes. All the data in diff.p and qvalue part are rounded.