Table 1.

Comparison of DIANA-miTED against existing resources cataloguing miRNA expression. Numbers of included datasets and their fold-difference compared to miTED, available expression units, version of miRBase and miRNA-relevant functionalities of each resource are presented. NA values correspond to cases in which accessing the resource or performing queries failed

Resource	Included datasets	Fold-increase in miTED	Expression units	miRBase version	miRNA-related functionalities	Links to tools and resources
miRmine	304	∼50	RPM	v21	Search by single/multiple miRNAs. Bulk data download.	miRBase, NCBI-SRA
HMED	401	∼38	RPM	v20	NA	NA
DASHR2	802	∼19	Counts, RPM	v19, v21	Search by single miRNA, coordinates, or sequence. Tissue specificity and read coverage information. Bulk data download.	UCSC Genome Browser
YM500v3	∼11 000	∼1.38	NA	v21	NA	NA
SEAWeb	4258	∼4.2	RPM	v21	Search by single/multiple miRNAs. Differential expression. Gene targets (miRTarBase). Disease associations. Result download.	miRBase, GeneCards, GEO, PubMed, Disease Ontology
DeepBase v3.0	∼11 500	∼1.31	RPM, log2(RPM)-mean	v22	Precursor-level miRNA expression (collected RPM values). Expression heatmaps. Query by dataset selection. Bulk data download.	UCSC Genome Browser, PubMed
DIANA-miTED	15 183	-	Counts, RPM, log2(RPM)	v22	Search by single/multiple miRNAs and/or single/multiple tissues or cell lines. Filter disease/healthy. Search for top expressed miRNAs. Search for top sites by miRNA abundance. Result download.	DIANA-tools (microT-CDS, TarBase, LncBase, miRPath), miRBase