Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2021 Dec 1;50(D1):D236–D245. doi: 10.1093/nar/gkab1089

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

PMC Copyright notice

Figure 3. — The main functions and usage of msRepDB. Through the ‘Home’ page shown in sub-graph (A), users can understand the research background, research value, and main advantages of msRepDB. Through the ‘Search and Download’ page shown in sub-graph (B), users can retrieve and download the complete repetitive sequences with annotation of the special species by selecting the species taxonomy name and repeat family name. Through the ‘Online Masking’ page shown in sub-graph (C), users can submit the sequence file in the FASTA format to be masked by dragging and dropping or paste the sequence to be masked into the input box on the interface. Through the ‘Submit’ page shown in sub-graph (D), users can update the contents of msRepDB database. Update operations can be divided into the following two types:1) inserting new records and 2) updating existing records in the database. Furthermore, users can also browse the complete functions and detailed instructions of msRepDB through the ‘About’ page, download all tools related to this research through the ‘Tools’ page, and learn about the development team of msRepDB through the ‘Team’ page. Sub-graph (E) shows the screenshot of the complete repetitive sequences with annotation of the special species in the FASTA format. Sub-graph (F) shows the screenshot of the mapping report. Sub-graph (G) shows the screenshot of the classification report. Sub-graph (H) shows the screenshot of the masked sequence file in the FASTA format. Sub-graph (I) shows the screenshot of the extracted masked sequences file in the FASTA format. Sub-graph (J) shows the screenshot of the annotation report.