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. 2021 Nov 17;50(D1):D1077–D1084. doi: 10.1093/nar/gkab1043

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© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 2. — TF dashboard webpage for E. coli K-12 MG1655 Fur regulator. (A) Metadata and relevant links. (B) Binding site table with curated list of binding peaks. Each tab contains the TFBSs for a unique condition (DPD versus Fe supplementation in this example). (C) Embedded Integrative Genomics Viewer (igv.js) component with annotation tracks and genome-wide peaks from raw data. (D–G) Feature visuals, which contains tabs for the various additional plots. (D) The active tab shows a histogram of binding peak widths. (E) A scatterplot of peak positions relative to their closest downstream gene. (F) The consensus binding sequence motifs.( G) Venn diagram comparing proChIPdb identified target genes versus literature regulon genes.