Official websites use .gov
A
.gov website belongs to an official
government organization in the United States.
Secure .gov websites use HTTPS
A lock (
) or https:// means you've safely
connected to the .gov website. Share sensitive
information only on official, secure websites.
Criteria used to establish the quality score of genome assemblies
| Criteria | Score |
|---|---|
| Assembled from type strain of species | 1 000 000 |
| Effective type strain of species according to NCBI | 100 000 |
| NCBI representative of species | 10 000 |
| Assembled from type strain of subspecies | 1000 |
| Complete genome | 100 |
| CheckM quality estimate | Completeness – 5 × contamination |
| MAG or SAG | –100 |
| Contig count | –5 × (no. contigs/100) |
| Undetermined bases | –5 × (no. undetermined bases/10 000) |
| Full length 16S rRNA gene | 10 |
