Table 1.
Genomic predictor | Annotation predictor | Benchmarking (AUC) | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Code | Number of targetsa | nGene | cGene | eGene | Number of seed (core) genesb | dGene | pGene | fGene | Number of crosstalk genesc | Pi | Naïved | GAe | EXf | TMg | Name |
AA | 15 195 | 33 | 42 | 174 | 229 | 30 | 16 | 19 | 43 | - | - | - | - | - | Alopecia areata |
AAV | 15 167 | 15 | 29 | 10 | 47 | 12 | 7 | 7 | 44 | - | - | - | - | - | ANCA-associated vasculitis |
ALG | 15 194 | 62 | 112 | 49 | 168 | 34 | 10 | 20 | 36 | 0.882 | 0.714 | 0.574 | - | 0.853 | Allergy |
AS | 15 409 | 410 | 682 | 85 | 1035 | 173 | 72 | 93 | 34 | 0.818 | 0.779 | 0.598 | 0.500 | 0.782 | Ankylosing spondylitis |
ASM | 15 246 | 125 | 206 | 96 | 359 | 66 | 24 | 41 | 46 | 0.918 | 0.760 | 0.591 | 0.523 | 0.839 | Asthma |
ATD | 15 292 | 134 | 186 | 243 | 458 | 82 | 31 | 47 | 40 | - | - | - | - | - | Autoimmune thyroid disease |
BD | 15 174 | 21 | 55 | 20 | 83 | 27 | 7 | 17 | 47 | - | - | - | - | - | Behcet’s disease |
CEL | 15 286 | 150 | 280 | 177 | 521 | 106 | 43 | 55 | 35 | - | - | - | - | - | Celiac disease |
CRO | 15 512 | 548 | 994 | 276 | 1482 | 230 | 96 | 108 | 35 | 0.920 | 0.628 | 0.537 | 0.539 | 0.795 | Crohn’s disease |
GD | 15 217 | 57 | 106 | 58 | 175 | 38 | 15 | 27 | 37 | - | - | - | - | - | Graves’ disease |
Gt | 15 173 | 42 | 36 | 24 | 83 | 7 | 4 | 4 | 41 | 0.794 | 0.741 | 0.586 | - | 0.766 | Gout |
JIA | 15 235 | 91 | 178 | 81 | 306 | 67 | 30 | 30 | 36 | 0.910 | 0.747 | 0.550 | 0.724 | 0.972 | Juvenile idiopathic arthritis |
MS | 15 360 | 263 | 566 | 187 | 830 | 111 | 63 | 58 | 35 | 0.891 | 0.699 | 0.517 | 0.509 | 0.761 | Multiple sclerosis |
OA | 15 165 | 19 | 33 | 3 | 45 | 2 | 2 | 3 | 36 | 0.718 | 0.666 | 0.506 | 0.570 | 0.806 | Osteoarthritis |
PBC | 15 264 | 134 | 229 | 153 | 432 | 74 | 36 | 38 | 36 | 0.558 | 0.667 | 0.527 | - | 0.570 | Primary biliary cholangitis |
PSO | 15 511 | 588 | 901 | 132 | 1379 | 220 | 91 | 118 | 33 | 0.916 | 0.651 | 0.584 | 0.531 | 0.773 | Psoriasis |
RA | 15 432 | 214 | 392 | 571 | 1014 | 154 | 66 | 70 | 33 | 0.913 | 0.688 | 0.603 | 0.578 | 0.848 | Rheumatoid arthritis |
SAR | 15 310 | 221 | 177 | 90 | 338 | 45 | 20 | 37 | 40 | 0.875 | 0.681 | 0.545 | 0.510 | 0.869 | Sarcoidosis |
SLE | 15 397 | 318 | 592 | 174 | 902 | 140 | 50 | 68 | 40 | 0.939 | 0.629 | 0.611 | 0.521 | 0.916 | Systemic lupus erythematosus |
SSC | 15 189 | 39 | 81 | 64 | 143 | 32 | 17 | 20 | 36 | 0.783 | 0.699 | 0.535 | - | 0.954 | Systemic scleroderma |
T1D | 15 364 | 246 | 368 | 292 | 761 | 117 | 53 | 70 | 50 | 0.818 | 0.692 | 0.537 | 0.504 | 0.866 | Type I Diabetes |
UC | 15 508 | 501 | 885 | 246 | 1365 | 208 | 92 | 106 | 33 | 0.914 | 0.741 | 0.567 | 0.619 | 0.801 | Ulcerative colitis |
IGE | 15 164 | 23 | 38 | 18 | 63 | 20 | 7 | 15 | 36 | - | - | - | - | - | IgE and allergic sensitization |
IIM | 15 220 | 80 | 78 | 37 | 144 | 34 | 8 | 23 | 33 | - | - | - | - | - | Idiopathic inflammatory myopathies |
KD | 15 169 | 27 | 44 | 26 | 79 | 21 | 6 | 8 | 34 | - | - | - | - | - | Kawasaki disease |
MG | 15 179 | 16 | 34 | 21 | 63 | 23 | 3 | 15 | 35 | - | - | - | - | - | Myasthenia gravis |
NAR | 15 173 | 29 | 27 | 9 | 60 | 13 | 8 | 10 | 36 | - | - | - | - | - | Narcolepsy |
PSC | 15 422 | 433 | 705 | 340 | 1122 | 196 | 78 | 111 | 33 | - | - | - | - | - | Primary sclerosing cholangitis |
SJO | 15 199 | 44 | 64 | 38 | 119 | 28 | 10 | 14 | 33 | - | - | - | - | - | Sjogren’s syndrome |
VIT | 15 361 | 171 | 227 | 470 | 772 | 99 | 52 | 54 | 34 | - | - | - | - | - | Vitiligo |
aThe total number of target genes prioritized.
bThe total number of genomic seed genes.
cThe total number of pathway crosstalk genes.
dAn approach prioritizing a gene by how often it has been targeted by existing approved drugs.
ePrioritization based on individual evidence from Genetic Associations (Open Targets).
fPrioritization based on individual evidence from gene EXpression (Open Targets).
gPrioritization based on individual evidence from Text Mining (Open Targets).