Table 3. Primers used in the functional gene abundance qPCR assay.
Gene | Forward Sequence | Reverse Sequence | Product size (bp) | Efficiency | Reference | |
---|---|---|---|---|---|---|
16s rRNA | 5’-TAA CCT GGG AAC GCG ATT T-3’ | 5’- CCA CTA CCC TCT ACC ACA CT-3’ | 55 | 111% | [37] | |
nosZ | 5’- AGA ACG ACC AGC TGA TCG ACA-3” | 5’- TCC ATG GTG ACG CCG TGG TTG-3’ | 300 | 101% | [38] | |
mcrA | 5’- AAA GTG CGG AGC AAT CAC C-3’ | 5’TCG TCC CAT TCC TGC TGC ATT GC-3’ | 186 | 87% | [39] | |
nirK | 5’-TCA TGG TGC CGC GGA CGG-3’ | 5- GAA CTT GCC GGT GCC CAG AC-3’ | 326 | 88% | [40] | |
amoA | 5’- GGG GTT TCT ACT GGT GGT-3’ | 5-‘ CCC CTC BGS AAA VCC TTC TTC-3’ | 491 | 81% | [41] |