Table 2.
Binding parameters between ligands and target protein HER-3
Phytochemicals | Binding energy (Kcal/mol) | Inhibition constant (µM) | Number of hydrogen bond | Amino acids involved in hydrogen bonding |
---|---|---|---|---|
Andrographolide | 8.07 | 1.21 | 4 | LYS 723, LEU 771, GLY 774, ASP 833 |
Bassic acid | − 8.14 | 1.08 | 2 | PRO 772, ASN 820 |
Crocetin | − 7.81 | 1.90 | 2 | GLN 769, LYS 853 |
Curdione | − 7.26 | 4.76 | 0 | - |
Etoposide | − 7.51 | 3.12 | 4 | LEU 771, LYS 723, PHE 701, ASN 815 |
Genkwanin | − 7.00 | 7.37 | 3 | LEU 771, LYS 723, ASP 833 |
Licochalcone A | − 7.04 | 6.90 | 2 | LYS 723, VAL 753 |
Nectandrin B | − 7.23 | 4.98 | 2 | ASN 820, PHE 834 |
Nimbolide | − 7.83 | 1.81 | 3 | PHE 701, LYS 723, LYS 853 |
Oleanolic acid | − 9.86 | 0.059 | 3 | THR 768, LYS 723, ARG 819 |
Panaxadiol | − 10.04 | 0.043 | 0 | –– |
Panaxatriol | − 8.91 | 0.296 | 1 | ASP 833 |
Salvicine | − 8.83 | 0.337 | 2 | ASP 833, GLN 769 |
Tetrandine | − 7.34 | 4.18 | 1 | ARG 781 |
Theaflavin | − 7.90 | 1.62 | 5 | LEU 771, GLN 769, CYS 721, THR 768, ASP 833 |
Tylophorine | − 7.55 | 2.94 | 2 | CYS 721, LYS 723 |
Ursolic acid | − 9.72 | 0.075 | 1 | ARG 819 |
Withaferin A | − 11.69 | 0.0027 | 3 | VAL 753, ASP 833, LEU 771 |
Hecogenin | − 10.50 | 0.020 | 3 | CYS 721, ASP 833, ASP 778 |
Dovitinib (Standard drug) | 8.77 | 0.373 | 1 | LEU 771 |
Gefitinib (Standard drug) | − 6.89 | 8.83 | 2 | CYS 721, LEU 771 |