Table 1.
Individual | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
Age | 9 y | 10 y | 10 y | 4 y | 3 y | 34 y | 11 y | 2 y | 2 y | 11 m | 7 y | 4 y |
Sex | Male | Female | Male | Male | Male | Female | Female | Female | Female | Male | Male | Female |
Mutation (NM_015100.3) | c.1005delG p.(Pro336Glnfs*23) | c.1640_1650 del p.(Cys547*) | c.2020delC p.(Arg674Valfs*9) | c.2080 C > T p.(Arg694*) | c.2080 C > T p.(Arg694*) | c.2080 C > T p.(Arg694*) | c.2310 C > G p.(Tyr770*) | c.2520_2521delCA p.(His 840Glnfs*23) | c.2711 T > A p.(Leu904*) | c.2933_2934dupTT, p.(Arg979Phefs*3) | c.3001 C > T p.(Arg1001*) | c.3354_3355delCTinsT p.(Leu 1119Cysfs*3) |
ACMG/ACGS criteria | PVS1, PS2_sup, PM2 | PVS1, PS2_sup, PM2 | PVS1, PS4_sup, PM2 | PVS1, PM2 | PVS1, PM2 | PVS1, PM2 | PVS1, PS2_sup, PM2 | PVS1, PS2_sup, PM2 | PVS1_strong, PS2_sup, PS4_ sup, PM2 | PVS1_strong, PS2_sup, PM2 | PVS1_strong, PS2_sup, PS4_mod, PM2 | PVS1_strong, PS2_sup, PS4_sup, PM2 |
Inheritance | De novo | De novo | Paternal | Maternal | Maternal | Unknown | De novo | De novo | De novo | De novo | De novo | De novo |
Novel | Yes | Yes | No | Yes | Yes | Yes | No | Yes | Yes | Yes | No | Yes |
Microcephaly | − | + | − | + | + | + | − | + | + | + | − | + |
DD or ID | Mild | Moderate | Moderate | Mild | DD | nr | Moderate | Mod-Severe | Severe | DD | Severe | Mild |
Severe Speech delay | − | + | + | + | + | nr | − | + | + | n/a | + | − |
Brain MRI | Normal | nr | nd | nd | nd | nd | nd | CC hypoplasia | Prominent CSF spaces | CC hypoplasia, prominent CSF spaces | Normal | nr |
Hypotonia | nr | nr | nr | + | nr | nr | nr | + | + | + | nr | nr |
Feeding | Initial delay in solids | Slow eater | Normal | Oesophageal dysmotility | Slow eater | Normal | Normal | Initial delay in solids | Initial delay in solids | Unsafe swallow | Initial delay in solids | Fussy eater |
Obesity | + | − | + | − | − | + | + | − | − | − | − | − |
Hearing | Mixed loss | Normal | Normal | Normal | Glue ear | Normal | Glue ear/ Grommets | Normal (ASSR) | SNHL | SNHL | Glue ear/ Grommets | Normal |
Vision | Ptosis | Strabismus, ptosis | Myopia | HM | HM | HM, macular drusen and pigment displacement | HM | Bilateral retinal coloboma | Cone-rod dystrophy, high HM | Prominent right eye with strabismus | Myopia | Left iris coloboma, normal vision |
Other features | Talipes equinovarus, CALs, mild scoliosis/lordosis sandal gap, widely spaced upper incisors | Sparse hair, brachydactyly | Small genitalia, sandal gap, irregular teeth, cleft lip and palate. | Intermittent unprovoked vomiting, hypermobile, | Early teeth eruption, hypermobile, | Asthma, hyperthyroidism, hypermobile | CALs | Diaphragmatic hernia, unilateral duplicated collecting system | Initial raised nuchal translucency | Cystic hygroma, atrial septal defect, pyloric stenosis, bilateral cryptorchidism | Atopy. gum hypertrophy | Atopy, asthma, splenic cyst |
Individuals 9 and 12 were reported in previous DDD publications but with limited phenotype information.
Age d(ays), m(onths), y(ears), ASSR auditory steady-state response, CALs café au lait macules, CC corpus callosum, CSF cerebrospinal fluid, DD developmental delay, HM hypermetropia, ID intellectual disability, n/a not applicable, nd not done, nr not reported, OFC occipitofrontal circumference, SNHL sensorineural hearing loss, sz seizures.