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. 2021 Dec 17;64(2):475–486. doi: 10.5194/aab-64-475-2021

Table 3.

Population genetic analysis of seven SNPs in six sheep breeds.

Gene Locus Breed Genotype frequency
Allele frequency
PIC HE χ2 (p value)
FLT3     CC CT TT C T      
  rs421947730 Hu sheep 0.10 0.29 0.61 0.24 0.76 0.299 0.366 3.644 (0.056)
    Cele Black sheep 0.04 0.38 0.58 0.24 0.76 0.295 0.360 0.266 (0.606)
    Prairie Tibetan sheep 0.04 0.30 0.66 0.19 0.81 0.258 0.305 0.019 (0.891)
    Sunite sheep 0.04 0.30 0.66 0.19 0.81 0.263 0.311 0.093 (0.761)
    Suffolk sheep 0.18 0.45 0.37 0.41 0.59 0.366 0.483 0.283 (0.595)
 
  
 Tan sheep
  
 0.17
 0.83
 0.09
 0.91
 0.146
 0.159
 0.209 (0.648)
 
  
  
 TT
 CT
 CC
 T
 C
  
  
  
  rs160510212 Hu sheep 0.05 0.24 0.71 0.17 0.83 0.241 0.280 1.645 (0.200)
    Cele Black sheep 0.05 0.32 0.63 0.21 0.79 0.274 0.327 0.008 (0.930)
    Prairie Tibetan sheep 0.04 0.26 0.70 0.17 0.83 0.241 0.281 0.331 (0.565)
    Sunite sheep 0.01 0.23 0.76 0.13 0.87 0.199 0.224 0.028 (0.867)
    Suffolk sheep 0.02 0.38 0.60 0.21 0.79 0.275 0.330 1.578 (0.209)
 
  
 Tan sheep
  
 0.04
 0.96
 0.02
 0.98
 0.042
 0.043
 0.011 (0.915)
NLRP5
 
  
 TT
 TC
 CC
 T
 C
  
  
  
  rs429977514 Hu sheep 0.40 0.44 0.16 0.62 0.38 0.360 0.470 0.362 (0.548)
    Cele Black sheep 0.26 0.50 0.24 0.51 0.49 0.375 0.500 5.097×105 (0.994)
    Prairie Tibetan sheep 0.20 0.46 0.34 0.43 0.57 0.370 0.491 0.262 (0.609)
    Sunite sheep 0.23 0.51 0.26 0.49 0.51 0.375 0.500 0.061 (0.807)
    Suffolk sheep 0.35 0.50 0.15 0.60 0.40 0.365 0.480 0.104 (0.747)
 
  
 Tan sheep
 0.17
 0.31
 0.52
 0.33
 0.67
 0.343
 0.440
 2.175 (0.140)
 
  
  
 CC
 CT
 TT
 C
 T
  
  
  
  rs408772397 Hu sheep 0.84   0.16 0.84 0.16 0.229 0.264 83 (8.205×10-20)
    Cele Black sheep 0.76   0.24 0.76 0.24 0.295 0.360 68 (1.635×10-16)
    Prairie Tibetan sheep 0.66   0.34 0.66 0.34 0.347 0.447 80 (3.744×10-19)
    Sunite sheep 0.71   0.29 0.71 0.29 0.325 0.408 70 (5.930×10-17)
    Suffolk sheep 0.85   0.15 0.85 0.15 0.222 0.255 60 (9.486×10-15)
 
  
 Tan sheep
 0.33
  
 0.67
 0.33
 0.67
 0.346
 0.444
 33 (9.216×10-9)
 
  
  
 GG
 GA
 AA
 G
 A
  
  
  
  rs426897754 Hu sheep 0.22 0.40 0.38 0.42 0.58 0.369 0.487 2.493 (0.114)
    Cele Black sheep 0.15 0.35 0.50 0.32 0.68 0.438 1.778 2.551 (0.110)
    Prairie Tibetan sheep 0.19 0.45 0.36 0.41 0.59 0.367 0.485 0.410 (0.522)
    Sunite sheep 0.15 0.46 0.39 0.39 0.61 0.362 0.474 0.087 (0.768)
    Suffolk sheep 0.22 0.48 0.30 0.46 0.54 0.373 0.497 0.042 (0.837)
 
  
 Tan sheep
 0.08
 0.22
 0.70
 0.20
 0.80
 0.265
 0.315
 2.200 (0.138)
TGIF1
 
  
 CC
 CT
 TT
 C
 T
  
  
  
  g.37866222C > T Hu sheep 1.00     1.00 0.00 0.000 0.000 0.000 (0.970)
    Cele Black sheep 1.00     1.00 0.00 0.000 0.000 0.000 (0.970)
    Prairie Tibetan sheep 1.00     1.00 0.00 0.000 0.000 0.000 (0.970)
    Sunite sheep 1.00     1.00 0.00 0.000 0.000 0.000 (0.970)
    Suffolk sheep 1.00     1.00 0.00 0.000 0.000 0.000 (0.970)
 
  
 Tan sheep
 1.00
  
  
 1.00
 0.00
 0.000
 0.000
 0.000 (0.970)
 
  
  
 CC
 CA
 AA
 C
 A
  
  
  
  rs1092900782 Hu sheep 0.73 0.27   0.87 0.13 0.203 0.230 1.937 (0.164)
    Cele Black sheep 0.97 0.03   0.99 0.01 0.029 0.029 0.015 (0.902)
    Prairie Tibetan sheep 0.96 0.04   0.98 0.02 0.036 0.037 0.029 (0.864)
    Sunite sheep 0.89 0.11   0.94 0.06 0.102 0.108 0.257 (0.612)
    Suffolk sheep 0.98 0.02   0.99 0.01 0.016 0.017 0.004 (0.948)
    Tan sheep 0.91 0.09   0.96 0.04 0.080 0.083 0.048 (0.827)