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. 2022 Jan 15;159:107041. doi: 10.1016/j.envint.2021.107041

Table 1.

Seven identified genome-wide gene-air pollution interaction signals Note: CAF = Coded Allele Frequency, INFO = Imputation quality, AP = Air Pollutant, LF = Lung Function, BP = Base Position. A negative BETA (interaction effect) suggests a more deleterious effect on lung function per unit increase of air pollutant as the coded allele increases. A positive BETA (interaction effect) suggests a more protective effect. Interaction effect is per 10 μg/m3 increase in air pollutant NO2 and per 5 μg/m3 increase for air pollution variables PM10 and PM2.5 as the coded allele increases. Lung function effects are the product of the BETA value and the observed standard deviation of the lung function trait within the analysed sample.

LF trait AP SNP CHR BP Coded allele Non-Coded allele CAF INFO BETA SE BETA effect in units of LF (ml for FEV1, FVC or percentage points for FEV1/FVC) P Locus
FVC PM10 rs74048016 1 1,068,280 C G 0.98 0.97 −0.139 0.025 −133.1 3.83 × 10-8 C1orf159 (dist = 16811), LINC01342 (dist = 4117)
FEV1 PM10 rs28666788 4 188,078,645 G A 0.096 0.99 −0.065 0.012 −49.2 3.92 × 10-8 FAT1 (dist = 433635), LINC02374 (dist = 44495)
FVC PM2.5 rs192415220 5 137,726,002 C T 0.006 0.94 −0.479 0.087 −459.3 3.96 × 10-8 KDM3B
FEV1/FVC PM10 rs137914543 6 6,414,006 G GTCTC 0.06 0.83 −0.101 0.016 −0.65 3.55 × 10-10 LY86-AS1
FEV1 PM2.5 rs138235384 7 125,969,169 C T 0.994 0.90 −0.466 0.085 −352.1 4.10 × 10-8 LOC101928283 (dist = 949794), GRM8 (dist = 109483)
FEV1 PM10 rs762101031 19 29,112,275 CAAT C 0.96 0.79 −0.120 0.022 −90.5 2.87 × 10-8 LOC100420587
FEV1 NO2 rs2825255 21 20,362,376 T C 0.83 1.00 −0.027 0.005 −20.6 2.53 × 10-9 MIR548XHG (dist = 230246), LINC01683 (dist = 903217)
FVC −0.025 0.005 −24.2 3.52 × 10-8