TABLE 3.

Predictive ability within and across subpopulations using RR-BLUP and all SNP markers.

Sub pops	DFF	NoSeedsPod	PH	PodsPlant	DM	SeedYield
Sub pop 5 (51)	0.27	0.26	0.08	-0.01	0.02	0.18
Sub pop 7 (58)	0.34	0.40	0.22	0.12	-0.01	0.01
Sub pop 8 (41)	0.68	0.35	0.33	0.07	0.43	0.37
SP-	0.50	0.45	0.47	0.25	0.51	0.34
SP+	0.53	0.35	0.42	0.25	0.48	0.45
SP PC10	0.51	0.41	0.44	0.18	0.20	0.43
Var exp (R2)	0.13	0.09	0.19	0.15	0.15	0.17

DFF is days to first flowering, NoSeedsPod is the number of seeds per pod, PH is plant height, PodsPlant is the number of pods per plant, DM is days to physiological maturity, SP- does not account for population structure, SP+, refers to the population structure addressed in the model, SP PC10 addresses population structure with 10 PC, Var exp (R²) refers the variance explained by population structure after fitting a regression model, within parenthesis represent the number of entries in each subpopulation.