Table 1.
Ciliopathy and cilia-associated genes in gene expression modules of different cell types in the developing primate brain (related to Fig. 3).
| a | |||
|---|---|---|---|
| Cortical gene expression modules | Total number of genes in module |
% Ciliopathy genes in module |
List of ciliopathy (confirmed and candidate) genes in module |
| BAKKEN2016_WGCNA_E40_M00 | 2484 | 2.254428341 | ADCY6,AIPL1,AKAP9,ARF4,ARL2BP,ARL6,B9D1,BBS4,BBS7,CCNO, CEP104,CEP19,CP110,DCDC2,DNAH5,DNAI1,DNAL4,DNALI1,EFCAB7, HNF1B,HYDIN,INVS,IQCE,KIF24,LCA5,LRAT,LRRC49,LRRC6,MLF1, MST1,NEK1,NIN,NPHP3,NPHP4,OFD1,PACRG,PIH1D3,PKD1, POMGNT1,PTCH1,PTK7,PTPDC1,RAB3IP,RFX3,ROPN1L,RPE65, RSPH1,SPAG1,SPAG6,SSX2IP,TEKT1,TMEM107,TMEM17,TPRA1,TUBE1, TUBGCP6 |
| BAKKEN2016_WGCNA_E40_M01 | 1621 | 1.480567551 | CCDC28B,CEP170,CRB3,CTTN,DCTN1,KIF17,KIF3A,KIF3B,KIF3C, KIF5C,KIFAP3,MARK4,MCHR1,MXI1,NME7,OCRL,PRKACB,RAB11A, SDCCAG8,7-SEP,SNX10,TTBK2,USP9X,WDR60 |
| BAKKEN2016_WGCNA_E40_M02 | 803 | 2.615193026 | CCDC151,CETN2,GALNT11,GNAS,GSK3A,IFT140,IFT52,INPP5E, KATNB1,KIF2A,MAPRE1,ODF2,PDE6D,PEBP1,PPP2R1A,PRKAR2B, RAB11B,RAB11FIP3,TUBB,TUBB2B |
| BAKKEN2016_WGCNA_E40_M03 | 1271 | 1.41620771 | ANO2,ARMC4,CNGB1,CYS1,DNAH6,GLI1,MAK,MORN3,PKHD1, PRKACA,RAB17,RDH12,RSG1,RSPH4A,SUFU,TTC21A,TTC25, ZMYND10 |
| BAKKEN2016_WGCNA_E40_M04 | 596 | 1.006711409 | KIF27,KIF7,MDM1,RSPH3,STK38L,TAPT1 |
| BAKKEN2016_WGCNA_E40_M05 | 1107 | 1.445347787 | C2CD3,CCDC22,CEP250,CEP89,CNTROB,GPR161,HTT,IFT122,MCRS1, MKKS,NUBP1,NUBP2,PAFAH1B1,RABL5,SSNA1,TCTN3,TULP3 |
| BAKKEN2016_WGCNA_E40_M06 | 1863 | 1.986044015 | AURKA,B9D2,BBS2,BBS9,CEP192,CEP72,CEP76,CEP97,CLUAP1,DNAL1, EVC2,FAM161A,FGFR1OP,GNAI2,GNAI3,HEATR2,IFT88,INPP5B, KIAA0586,MKS1,NEK9,ORC1,PLK1,POC1A,RAB23,RAB28,RILPL2, RTTN,SAV1,2- SEP,SMO,SYNE2, TCTN1,TMEM138,TMEM231,TTC17,WRAP73 |
| BAKKEN2016_WGCNA_E40_M07 | 1603 | 4.304429195 | AHI1,ALMS1,ANKS6,ARL13B,ASAP1,ATXN10,BBS10,BBS5,BUB1B, CC2D2A,CCDC14,CENPF,CENPJ,CEP120,CEP128,CEP135,CEP152, CEP290,CEP350,CEP63,CEP78,CETN3,CRB1,CROCC,CSPP1,DZIP1, EFHC1,FAM58A,FOXJ1,GLI3,HSPB11,IFT172,IFT57,IFT74,IFT80,IQCB1, IQUB,KCNJ13,KIF14,LZTFL1,MNS1,NEK2,PARD3,PCM1,PHF17,PIK3R4, PKD2,PLK4,POC1B,RFX2,RPGRIP1L,SASS6,SPA17,SPAG16,SPATA7, SPICE1,STIL,STK3,STK39,TEX9,TMEM216,TMEM67,TRIM32,TRIP11, TTC30A,TTC30B,TTC8,WDR19,WDR35 |
| BAKKEN2016_WGCNA_E40_M08 | 1093 | 0.640439158 | MAL,MERTK,RP2,TBX3,TUBA4A,WNK1,ZIC2 |
| BAKKEN2016_WGCNA_E50_M00 | 3475 | 1.928057554 | AHI1,AIPL1,ANKS6,ANO2,ARF4,ARL2BP,ARL6,ARMC4,BBS10,BBS7, CCNO,CEP290,CEP72,CEP97,CETN2,CNGB1,CP110,CSPP1,CYS1, DCDC2,DNAH5,DNAH6,GPR161,HNF1B,HYDIN,IFT140,INPP5E,INVS, IQCE,KCNJ13,KIF17,KIF27,LCA5,LRAT,LRRC6,MAK,MCHR1,MKKS, MLF1,MST1,NEK1,NPHP3,PKD1,PKHD1,PRKACA,PTPDC1,RAB17, RFX3,RPE65,RSG1,RSPH1,RSPH3,RSPH4A,SPAG6,SPATA7,SSX2IP, SUFU,TCTN3,TEKT1,TMEM67,TRIM32,TTC17,TTC21A,TTC30A, TUBE1,WDR35,ZMYND10 |
| BAKKEN2016_WGCNA_E50_M01 | 1295 | 1.467181467 | CEP19,EFCAB7,GALNT11,KIF2A,LRRC49,MORN3,NIN,NME7,PACRG, PRKACB,PRKAR2B,RAB3IP,RDH12,ROPN1L,SNX10,TAPT1,TMEM17, TTBK2,USP9X |
| BAKKEN2016_WGCNA_E50_M02 | 1304 | 1.303680982 | AKAP9,ATXN10,CCDC28B,CEP104,CEP170,CRB3,CTTN,HSPB11,KIF3A, KIF3B,KIF3C,KIF5C,KIFAP3,MXI1,OCRL,RAB11A,SDCCAG8 |
| BAKKEN2016_WGCNA_E50_M03 | 799 | 1.627033792 | CCDC151,DCTN1,GSK3A,KATNB1,MAPRE1,MARK4,PDE6D,PEBP1, POMGNT1,PPP2R1A,RAB11B,TUBB,TUBB2B |
| BAKKEN2016_WGCNA_E50_M04 | 518 | 1.158301158 | DNAL4,GNAS,IFT52,NUBP2,TUBGCP6,WRAP73 |
| BAKKEN2016_WGCNA_E50_M05 | 1079 | 1.668211307 | B9D2,C2CD3,CCDC22,CEP250,CEP89,CNTROB,FAM58A,GNAI2,HTT, IFT122,INPP5B,KIF7,MCRS1,NUBP1,PAFAH1B1,RAB11FIP3,RABL5, SSNA1,TUBA4A |
| BAKKEN2016_WGCNA_E50_M06 | 2916 | 3.429355281 | ADCY6,ALMS1,ARL13B,ASAP1,AURKA,B9D1,BBS2,BBS4,BBS5,BBS9, BUB1B,CC2D2A,CCDC14,CENPF,CENPJ,CEP120,CEP128,CEP135, CEP152,CEP192,CEP350,CEP63,CEP76,CEP78,CETN3,CLUAP1,CRB1, CROCC,DNAI1,DNAL1,DNALI1,DZIP1,EFHC1,EVC2,FAM161A, FGFR1OP,FOXJ1,GLI1,GLI3,GNAI3,HEATR2,IFT172,IFT57,IFT74,IFT80, IFT88,IQCB1,iQuB,KIAA0586,KIF14,KIF24,LZTFL1,MDM1,MKS1,MNS1, NEK2,NEK9,NPHP4,ODF2,ORC1,PARD3,PCM1,PHF17,PIH1D3,PIK3R4, PKD2,PLK1,PLK4,POC1A,POC1B,PTCH1,PTK7,RAB23,RAB28,RFX2, RILPL2,RP2,RPGRIP1L,RTTN,SASS6,SAV1,2-SEP, SMO,SPA17,SPAG1,SPAG16,SPICE1,STIL,STK3,STK38L,STK39,SYNE2, TCTN1,TEX9,TMEM107,TMEM138,TMEM216,TMEM231,TPRA1, TRIP11,TTC30B,TTC8,TULP3,WDR19,ZIC2 |
| BAKKEN2016_WGCNA_E50_M07 | 578 | 0.346020761 | MAL,TBX3 |
| BAKKEN2016_WGCNA_E50_M08 | 477 | 1.257861635 | MERTK,OFD1,7-SEP,TTC25,WDR60,WNK1 |
| BAKKEN2016_WGCNA_E70_M00 | 3085 | 1.458670989 | ADCY6,ANKS6,ARL2BP,ARMC4,ASAP1,CEP72,CEP78,CEP89,CLUAP1, CP110,CRB3,DCDC2,DNAH5,DNAH6,EFHC1,HNF1B,HYDIN,INPP5E, INVS,KIF27,LRAT,MAL,MCHR1,MKKS,MLF1,MORN3,MST1,NEK1, NPHP3,PKD1,POMGNT1,PTK7,PTPDC1,ROPN1L,RPE65,SAV1,SPA17, SPAG1,TBX3,TRIM32,TTC17,TTC21A,TTC30B,TUBGCP6,WNK1 |
| BAKKEN2016_WGCNA_E70_M01 | 1240 | 1.048387097 | CEP19,GALNT11,IQCE,KIF3A,LRRC49,MAK,NIN,NME7,PRKACB, RAB3IP,RDH12,SNX10,TMEM17 |
| BAKKEN2016_WGCNA_E70_M02 | 1405 | 0.996441281 | CCDC28B,DCTN1,GSK3A,KIF2A,KIF3B,KIF3C,KIF5C,KIFAP3,OCRL, PEBP1,PPP2R1A,PRKAR2B,RAB11A,SDCCAG8 |
| BAKKEN2016_WGCNA_E70_M03 | 1164 | 2.319587629 | AKAP9,ARF4,ARL6,ATXN10,BBS10,BBS7,CEP104,CEP120,CEP170, CEP350,CSPP1,EFCAB7,FAM58A,HSPB11,IFT57,IFT80,MXI1,OFD1,RFX3, SPATA7,SSX2IP,TAPT1,TTBK2,TUBE1,USP9X,WDR35,WDR60 |
| BAKKEN2016_WGCNA_E70_M04 | 1116 | 1.702508961 | AIPL1,ANO2,CCNO,CEP290,CEP97,CNGB1,CYS1,KIF17,LRRC6,MARK4, PKHD1,PRKACA,RAB17,RSG1,RSPH4A,SPAG6,SUFU,TTC25,ZMYND10 |
| BAKKEN2016_WGCNA_E70_M05 | 1315 | 2.053231939 | B9D2,C2CD3,CCDC22,CEP250,CETN2,CNTROB,CTTN,DNAL4,GNAS, GPR161,HTT,IFT122,IFT140,IFT52,KATNB1,KIF7,MAPRE1,MCRS1, NPHP4,NUBP1,NUBP2,PDE6D,RAB11B,RSPH3,TUBB,TUBB2B,WRAP73 |
| BAKKEN2016_WGCNA_E70_M06 | 3116 | 3.498074454 | AHI1,ALMS1,ARL13B,AURKA,B9D1,BBS2,BBS4,BBS5,BBS9,BUB1B, CC2D2A,CCDC14,CCDC151,CENPF,CENPJ,CEP128,CEP135,CEP152, CEP192,CEP63,CEP76,CETN3,CRB1,CROCC,DNAI1,DNAL1,DNALI1, DZIP1,EVC2,FAM161A,FGFR1OP,FOXJ1,GLI1,GLI3,GNAI2,GNAI3, HEATR2,IFT172,IFT74,IFT88,INPP5B,IQCB1,IQUB,KCNJ13,KIAA0586, KIF14,KIF24,LCA5,LZTFL1,MDM1,MERTK,MKS1,MNS1,NEK2,NEK9, ODF2,ORC1,PACRG,PAFAH1B1,PARD3,PCM1,PHF17,PIH1D3,PIK3R4, PKD2,PLK1,PLK4,POC1A,POC1B,PTCH1,RAB11FIP3,RAB23,RAB28, RABL5,RFX2,RILPL2,RP2,RPGRIP1L,RSPH1,RTTN,SASS6,2-SEP,7-SEP, SMO,SPAG16,SPICE1,SSNA1,STIL,STK3, STK38L,STK39,SYNE2,TCTN1,TCTN3,TEKT1,TEX9,TMEM107, TMEM138,TMEM216,TMEM231,TMEM67,TPRA1,TRIP11,TTC30A,TTC8, TUBA4A,TULP3,WDR19,ZIC2 |
| BAKKEN2016_WGCNA_E80_M00 | 3065 | 1.924959217 | ADCY6,AIPL1,ANKS6,ANO2,ARL2BP,ARMC4,ASAP1,BBS9,CCDC151, CCNO,CEP135,CEP290,CEP350,CEP72,CEP78,CEP97,CNGB1,CP110, CRB3,CYS1,DNAH6,DNAL1,EFHC1,GLI1,HNF1B,HYDIN,INVS,KIF27, LRAT,LRRC6,MAL,MCHR1,MORN3,MST1,NIN,NPHP4,ODF2,PKD1, PKHD1,PRKACA,PTPDC1,RAB17,RFX3,RPE65,RSG1,RSPH3,RSPH4A, SAV1,SPAG1,SPAG6,SUFU,TCTN1,TCTN3,TMEM67,TPRA1,TTBK2, TTC21A,TTC25,WDR60 |
| BAKKEN2016_WGCNA_E80_M01 | 936 | 0.854700855 | KIFAP3,NME7,RAB3IP,RDH12,ROPN1L,SNX10,TAPT1,TMEM17 |
| BAKKEN2016_WGCNA_E80_M02 | 434 | 1.152073733 | AHI1,KIF17,MAK,OCRL,POMGNT1 |
| BAKKEN2016_WGCNA_E80_M03 | 691 | 2.604920405 | AKAP9,ARL6,ATXN10,CEP104,CEP170,CEP19,GALNT11,IFT57,KIF2A, KIF3A,LRRC49,MKKS,PRKACB,PRKAR2B,SPA17,SSX2IP,TRIM32, USP9X |
| BAKKEN2016_WGCNA_E80_M04 | 534 | 0.561797753 | KIF3B,KIF3C,KIF5C |
| BAKKEN2016_WGCNA_E80_M05 | 364 | 0.549450549 | CCDC28B,PEBP1 |
| BAKKEN2016_WGCNA_E80_M06 | 834 | 2.757793765 | ARF4,BBS10,BBS5,BBS7,CEP120,CEP76,CETN2,CSPP1,EFCAB7,FAM161A, HSPB11,IFT80,MDM1,MLF1,PHF17,PIK3R4,RAB11A,RAB23,RAB28, RPGRIP1L,SPATA7,TTC30A,TUBE1 |
| BAKKEN2016_WGCNA_E80_M07 | 373 | 0.536193029 | IQCE,TUBGCP6 |
| BAKKEN2016_WGCNA_E80_M08 | 660 | 2.272727273 | C2CD3,CEP250,CTTN,DCTN1,DNAL4,GSK3A,HTT,IFT122,IFT140, INPP5E,KATNB1,MARK4,NUBP2,PPP2R1A,RAB11B |
| BAKKEN2016_WGCNA_E80_M09 | 1096 | 1.551094891 | B9D2,CCDC22,CEP89,CNTROB,FAM58A,GNAS,GPR161,IFT52,MAPRE1, MCRS1,NUBP1,PDE6D,SSNA1,TTC17,TUBB,TUBB2B,WRAP73 |
| BAKKEN2016_WGCNA_E80_M10 | 835 | 2.395209581 | ARL13B,CCDC14,CEP192,CETN3,GNAI3,HEATR2,IFT88,IQCB1,LCA5, NEK1,POC1B,RP2,RTTN,SASS6,7-SEP,STK38L, STK39,TRIP11,TTC8,WDR35 |
| BAKKEN2016_WGCNA_E80_M11 | 371 | 0.808625337 | MERTK,MXI1,RSPH1 |
| BAKKEN2016_WGCNA_E80_M12 | 1952 | 3.790983607 | ALMS1,AURKA,B9D1,BBS2,BBS4,BUB1B,CC2D2A,CENPF,CENPJ, CEP128,CEP152,CEP63,CLUAP1,CRB1,CROCC,DCDC2,DNAH5,DNAI1, DNALI1,DZIP1,EVC2,FGFR1OP,FOXJ1,GLI3,GNAI2,IFT172,IFT74, INPP5B,IQUB,KCNJ13,KIAA0586,KIF14,KIF24,KIF7,LZTFL1,MKS1,MNS1, NEK2,NEK9,NPHP3,ORC1,PACRG,PAFAH1B1,PARD3,PCM1,PIH1D3, PKD2,PLK1,PLK4,POC1A,PTCH1,PTK7,RAB11FIP3,RABL5,RFX2, RILPL2,2-SEP,SMO,SPAG16,SPICE1,STIL,STK3,SYNE2,TEKT1,TEX9, TMEM107,TMEM138,TMEM216,TMEM231,TTC30B,TUBA4A,TULP3, WDR19,ZIC2,ZMYND10 |
| BAKKEN2016_WGCNA_E80_M13 | 296 | 1.351351351 | OFD1,SDCCAG8,TBX3,WNK1 |
| BAKKEN2016_WGCNA_E90_M00 | 3082 | 1.26541207 | ADCY6,AIPL1,ANKS6,ANO2,ARL2BP,CEP192,CEP250,CEP89,CEP97, CNGB1,CP110,CRB3,CYS1,FAM161A,HNF1B,INPP5E,INVS,IQCE,KIF7, LRAT,MCHR1,MST1,NIN,NPHP4,OFD1,PKD1,PKHD1,PRKACA,RAB17, RFX3,RPE65,RSG1,SAV1,SDCCAG8,SUFU,TRIP11,TUBA4A,TUBGCP6 |
| BAKKEN2016_WGCNA_E90_M01 | 1285 | 1.322957198 | AKAP9,CEP170,CEP19,CEP72,GALNT11,KIF2A,KIF3A,KIFAP3,LRRC49, NME7,PRKACB,PRKAR2B,RAB3IP,SNX10,SSX2IP,TAPT1,TMEM17, USP9X |
| BAKKEN2016_WGCNA_E90_M02 | 941 | 0.743889479 | KIF17,KIF3B,KIF3C,KIF5C,MKKS,OCRL,RDH12 |
| BAKKEN2016_WGCNA_E90_M03 | 852 | 1.76056338 | C2CD3,CCDC28B,DCTN1,GPR161,GSK3A,HTT,KATNB1,MARK4, PDE6D,PEBP1,PPP2R1A,RAB11A,TTC17,TUBB,TUBB2B |
| BAKKEN2016_WGCNA_E90_M04 | 923 | 1.19176598 | CNTROB,CTTN,DNAL4,GNAS,HSPB11,IFT52,MCRS1,NUBP1,NUBP2, ODF2,RAB11B |
| BAKKEN2016_WGCNA_E90_M05 | 1043 | 2.396931927 | ARF4,ARL6,ASAP1,ATXN10,BBS10,BBS5,BBS7,CEP104,CEP120,CEP76, CSPP1,EFCAB7,FAM58A,IFT57,IFT80,MDM1,MLF1,PIK3R4,RAB23, RAB28,SPATA7,STK39,TRIM32,TUBE1,WRAP73 |
| BAKKEN2016_WGCNA_E90_M06 | 587 | 1.022146508 | CEP290,CEP350,MXI1,PHF17,TTBK2,WDR60 |
| BAKKEN2016_WGCNA_E90_M07 | 336 | 0.595238095 | MAL,TBX3 |
| BAKKEN2016_WGCNA_E90_M08 | 363 | 0.275482094 | MERTK |
| BAKKEN2016_WGCNA_E90_M09 | 712 | 2.106741573 | B9D2,CCDC22,CETN2,EVC2,GNAI2,IFT140,KIAA0586,MAPRE1, PAFAH1B1,POMGNT1,RAB11FIP3,RABL5,SSNA1,TCTN1,TMEM138 |
| BAKKEN2016_WGCNA_E90_M10 | 1615 | 3.343653251 | ARL13B,AURKA,BBS2,BUB1B,CC2D2A,CCDC14,CENPF,CENPJ,CEP152, CEP63,CETN3,CRB1,DZIP1,GLI1,GLI3,GNAI3,IFT74,IFT88,INPP5B, IQCB1,KIF14,LCA5,MKS1,MNS1,NEK1,NEK2,NEK9,NPHP3,ORC1, PARD3,PKD2,PLK1,PLK4,POC1A,POC1B,PTCH1,PTK7,PTPDC1,RILPL2, RP2,RTTN,SASS6,2-SEP,7-SEP,SMO,SPICE1,STIL,STK3,STK38L,SYNE2, TEX9,TMEM107,TMEM216,TULP3,ZIC2 |
| BAKKEN2016_WGCNA_E90_M11 | 454 | 12.99559471 | AHI1,ALMS1,ARMC4,B9D1,BBS4,BBS9,CCDC151,CCNO,CEP128,CEP135, CEP78,CLUAP1,CROCC,DCDC2,DNAH5,DNAH6,DNAI1,DNAL1, DNALI1,EFHC1,FGFR1OP,FOXJ1,HEATR2,HYDIN,IFT122,IFT172,IQUB, KCNJ13,KIF24,KIF27,LRRC6,LZTFL1,MAK,MORN3,PACRG,PCM1, PIH1D3,RFX2,ROPN1L,RPGRIP1L,RSPH1,RSPH3,RSPH4A,SPA17, SPAG1,SPAG16,SPAG6,TCTN3,TEKT1,TMEM231,TMEM67,TPRA1, TTC21A,TTC25,TTC30A,TTC30B,TTC8,WDR19,WDR35,ZMYND10 |
| BAKKEN2016_WGCNA_E90_M12 | 248 | 0.403225806 | WNK1 |
| BAKKEN2016_WGCNA_E120_M00 | 3095 | 1.357027464 | ADCY6,AHI1,AIPL1,ANO2,AURKA,C2CD3,CCDC14,CCDC22,CENPJ, CEP104,CEP135,CEP192,CEP350,CEP89,CEP97,CNGB1,CRB3,CTTN, CYS1,FAM161A,FAM58A,GPR161,IFT57,IFT80,KIF17,LRAT,MAPRE1, MCHR1,NIN,ODF2,PAFAH1B1,PKD1,POMGNT1,PRKACA,RAB17, RAB23,RPE65,SASS6,SSNA1,SUFU,SYNE2,TMEM17,TUBGCP6 |
| BAKKEN2016_WGCNA_E120_M01 | 1673 | 1.434548715 | ARF4,ASAP1,CEP19,CEP72,CEP76,GALNT11,INVS,KIF2A,KIF3A,KIFAP3, LRRC49,MKKS,NME7,PKHD1,PRKACB,PRKAR2B,RAB3IP,RDH12, SNX10,SSX2IP,STK39,TAPT1,TRIM32,USP9X |
| BAKKEN2016_WGCNA_E120_M02 | 1182 | 0.846023689 | CCDC28B,IQCE,KIF3B,KIF3C,KIF5C,OCRL,PDE6D,PEBP1,TUBB, TUBB2B |
| BAKKEN2016_WGCNA_E120_M03 | 921 | 1.520086862 | CEP250,CNTROB,DCTN1,GNAS,GSK3A,HTT,INPP5E,MARK4,MCRS1, NUBP1,NUBP2,PPP2R1A,RAB11B,WRAP73 |
| BAKKEN2016_WGCNA_E120_M04 | 1167 | 1.199657241 | AKAP9,ARL6,ATXN10,BBS7,CEP120,CEP170,EFCAB7,PHF17,PIK3R4, RAB11A,RAB28,TTBK2,TTC17,TUBE1 |
| BAKKEN2016_WGCNA_E120_M05 | 594 | 1.346801347 | DZIP1,KIF14,MAL,ORC1,PLK1,7-SEP,TBX3,TUBA4A |
| BAKKEN2016_WGCNA_E120_M06 | 2158 | 1.343836886 | BUB1B,CENPF,CEP63,GLI1,GLI3,GNAI2,GNAI3,KIF7,MERTK,MXI1, NEK9,NPHP3,PACRG,PARD3,PKD2,POC1A,POC1B,PTCH1,PTK7, RAB11FIP3,RILPL2,RP2,2-SEP,SMO, STK3,STK38L,TMEM216,TPRA1,ZIC2 |
| BAKKEN2016_WGCNA_E120_M07 | 1253 | 8.858739026 | ALMS1,ANKS6,ARL13B,ARL2BP,ARMC4,B9D1,B9D2,BBS10,BBS2,BBS4, BBS5,BBS9,CC2D2A,CCDC151,CCNO,CEP128,CEP152,CEP290,CEP78, CETN2,CETN3,CLUAP1,CP110,CRB1,CROCC,CSPP1,DCDC2,DNAH5, DNAH6,DNAI1,DNAL1,DNAL4,DNALI1,EFHC1,EVC2,FGFR1OP,FOXJ1, HEATR2,HNF1B,HSPB11,HYDIN,IFT122,IFT140,IFT172,IFT52,IFT74, IFT88,INPP5B,IQCB1,IQUB,KATNB1,KCNJ13,KIAA0586,KIF24,KIF27, LCA5,LRRC6,LZTFL1,MAK,MDM1,MKS1,MLF1,MNS1,MORN3,MST1, NEK1,NEK2,NPHP4,OFD1,PCM1,PIH1D3,PLK4,PTPDC1,RABL5,RFX2, RFX3,ROPN1L,RPGRIP1L,RSG1,RSPH1,RSPH3,RSPH4A,RTTN,SAV1, SDCCAG8,SPA17,SPAG1,SPAG16,SPAG6,SPATA7,SPICE1,STIL,TCTN1, TCTN3,TEKT1,TEX9,TMEM107,TMEM138,TMEM231,TMEM67,TRIP11, TTC21A,TTC25,TTC30A,TTC30B,TTC8,TULP3,WDR19,WDR35, WDR60,ZMYND10 |
| BAKKEN2016_WGCNA_E120_M08 | 398 | 0.251256281 | WNK1 |
| BAKKEN2016_WGCNA_0M_M00 | 2960 | 1.959459459 | ADCY6,AIPL1,ALMS1,ANKS6,ANO2,ASAP1,B9D1,BBS4,CCDC151,CCNO, CENPF,CENPJ,CEP128,CEP135,CEP250,CEP350,CEP97,CNGB1,CP110, CTTN,DNAH6,FGFR1OP,HSPB11,IFT172,INPP5E,IQUB,KCNJ13,KIF24, LRAT,LRRC6,MAK,MCHR1,MNS1,MORN3,ORC1,PAFAH1B1,PIH1D3, PKD1,PLK4,POC1A,PRKACA,RAB11A,RAB11B,RAB3IP,RILPL2,RSPH4A, SAV1,SDCCAG8,SPAG1,SPAG6,SUFU,TMEM107,TMEM138,TMEM67, TTC17,USP9X,WDR60,ZMYND10 |
| BAKKEN2016_WGCNA_0M_M01 | 3173 | 2.111566341 | AHI1,ATXN10,AURKA,B9D2,C2CD3,CCDC22,CCDC28B,CEP19,CEP72, CEP76,DCTN1,DNAH5,DNAL4,FAM58A,GALNT11,GPR161,GSK3A,HTT, IFT122,IFT57,INVS,KATNB1,KIF17,KIF2A,KIF3A,KIF3B,KIF3C,KIF5C, KIFAP3,LRRC49,MARK4,MCRS1,MKKS,NEK2,NME7,NPHP4,NUBP1, NUBP2,OCRL,PDE6D,PEBP1,PHF17,PKHD1,PPP2R1A,PRKAR2B,RAB17, RABL5,RDH12,ROPN1L,RSPH1,RSPH3,SNX10,SPA17,SSX2IP,STIL, SYNE2,TCTN1,TCTN3,TEKT1,TMEM17,TRIM32,TTBK2,TUBA4A, TUBB,TUBB2B,TUBGCP6,WRAP73 |
| BAKKEN2016_WGCNA_0M_M02 | 714 | 1.120448179 | BBS9,CC2D2A,CYS1,DCDC2,DNAL1,GNAS,HNF1B,IQCE |
| BAKKEN2016_WGCNA_0M_M03 | 1079 | 1.853568119 | AKAP9,ARF4,ARL6,BBS5,CEP192,CEP78,CETN2,CLUAP1,EFCAB7, EFHC1,FAM161A,IFT52,IFT80,LZTFL1,MLF1,PIK3R4,RAB28,RFX3, RPGRIP1L,SPATA7 |
| BAKKEN2016_WGCNA_0M_M04 | 783 | 2.426564496 | ARL2BP,BBS10,BBS7,BUB1B,CEP120,CEP170,CEP63,CSPP1,LCA5,MDM1, NIN,PRKACB,7-SEP,SPICE1,TAPT1,TTC30A,TTC8,TUBE1,WDR19 |
| BAKKEN2016_WGCNA_0M_M05 | 1853 | 1.726929304 | BBS2,CNTROB,CRB3,CROCC,DNAI1,EVC2,GLI3,GNAI2,GNAI3,IFT140, KIAA0586,MST1,NEK1,NEK9,NPHP3,PARD3,PKD2,POC1B,PTCH1,PTK7, RAB11FIP3,RFX2,RPE65,2-SEP,SMO,SPAG16,STK3,STK38L,TMEM216, TTC21A,TULP3,ZIC2 |
| BAKKEN2016_WGCNA_0M_M06 | 526 | 1.330798479 | DZIP1,GLI1,KIF7,MERTK,MXI1,ODF2,TBX3 |
| BAKKEN2016_WGCNA_0M_M07 | 1353 | 3.17812269 | ARL13B,ARMC4,CCDC14,CEP104,CEP152,CEP290,CEP89,CETN3,CRB1, DNALI1,FOXJ1,HEATR2,HYDIN,IFT74,IFT88,INPP5B,IQCB1,KIF14, KIF27,MAL,MAPRE1,MKS1,OFD1,PACRG,PCM1,PLK1,POMGNT1, PTPDC1,RAB23,RP2,RSG1,RTTN,SASS6,SSNA1,STK39,TEX9,TMEM231, TPRA1,TRIP11,TTC25,TTC30B,WDR35,WNK1 |
| BAKKEN2016_WGCNA_3M_M00 | 2279 | 2.237823607 | ADCY6,AIPL1,ALMS1,ANKS6,ANO2,ARMC4,B9D1,BBS4,CENPJ,CEP128, CEP135,CEP350,CEP78,CEP97,CLUAP1,CNGB1,CROCC,CSPP1,EFHC1, FOXJ1,GLI1,HNF1B,HYDIN,IFT74,INPP5B,KCNJ13,KIF14,KIF24,KIF27, KIF7,LRAT,LRRC6,MAK,MORN3,MST1,NIN,ORC1,PIH1D3,PKHD1, PLK1,PRKACA,PTK7,RAB11A,RAB11B,RAB3IP,SAV1,SDCCAG8,SUFU, TEX9,TTC21A,WDR19 |
| BAKKEN2016_WGCNA_3M_M01 | 2318 | 1.98446937 | AHI1,ARL6,ASAP1,ATXN10,C2CD3,CCNO,CYS1,DNAH6,DNAL1, DNAL4,GNAS,GSK3A,HTT,IFT57,INPP5E,INVS,IQCE,KATNB1,KIF3A, KIF3B,KIF3C,KIF5C,KIFAP3,LRRC49,MARK4,NME7,NPHP4,OCRL, PEBP1,POC1A,RAB17,RSPH1,RSPH3,SNX10,SSX2IP,STIL,TCTN3,TEKT1, TMEM17,TMEM67,TRIM32,TTBK2,TTC17,TUBA4A,TUBB,USP9X |
| BAKKEN2016_WGCNA_3M_M02 | 1448 | 1.726519337 | B9D2,BBS9,CCDC151,CCDC22,CEP76,CETN2,DCTN1,FAM58A, FGFR1OP,GALNT11,IFT172,IFT80,LZTFL1,MKKS,NUBP1,NUBP2,PDE6D, ROPN1L,SPA17,SPAG1,SPAG6,SPATA7,TUBGCP6,WDR60,WRAP73 |
| BAKKEN2016_WGCNA_3M_M03 | 584 | 2.739726027 | AURKA,BBS7,BUB1B,CCDC28B,CENPF,CTTN,GPR161,IFT122,MCRS1, PHF17,PKD1,PPP2R1A,RDH12,SYNE2,TTC25 |
| BAKKEN2016_WGCNA_3M_M04 | 678 | 2.212389381 | CC2D2A,CEP72,DCDC2,DNAH5,HSPB11,KIF17,MCHR1,MLF1,NEK2, PRKAR2B,PTCH1,RFX3,RSPH4A,TUBB2B,ZMYND10 |
| BAKKEN2016_WGCNA_3M_M05 | 1227 | 1.711491443 | AKAP9,ARF4,ARL2BP,BBS10,BBS5,CEP120,CEP19,CEP192,EFCAB7, FAM161A,IFT52,KIF2A,MDM1,PAFAH1B1,PIK3R4,PLK4,RAB28,RABL5, RPGRIP1L,TTC8,WDR35 |
| BAKKEN2016_WGCNA_3M_M06 | 1489 | 1.813297515 | BBS2,CEP250,CRB1,DNAI1,DNALI1,EVC2,GLI3,GNAI2,GNAI3,KIAA0586, MXI1,NEK1,NEK9,NPHP3,PACRG,PARD3,PCM1,RAB11FIP3,RFX2, RSG1,2-SEP,SMO,STK38L,TMEM107,TMEM216,TULP3,ZIC2 |
| BAKKEN2016_WGCNA_3M_M07 | 604 | 1.655629139 | CNTROB,DZIP1,IFT140,IQUB,MERTK,MKS1,ODF2,RILPL2,TBX3, TPRA1 |
| BAKKEN2016_WGCNA_3M_M08 | 1814 | 2.425578831 | ARL13B,CCDC14,CEP104,CEP152,CEP170,CEP290,CEP63,CEP89,CETN3, CP110,CRB3,HEATR2,IFT88,IQCB1,LCA5,MAL,MAPRE1,MNS1,OFD1, PKD2,POC1B,POMGNT1,PRKACB,PTPDC1,RAB23,RP2,RPE65,RTTN, SASS6,7-SEP,SPAG16,SPICE1,SSNA1,STK3,STK39,TAPT1,TCTN1, TMEM138,TMEM231,TRIP11,TTC30A,TTC30B,TUBE1,WNK1 |
| BAKKEN2016_WGCNA_12M_M00 | 2310 | 1.904761905 | AIPL1,ANO2,ARMC4,AURKA,BBS4,BBS9,BUB1B,CENPJ,CEP128,CEP192, CEP350,CEP72,CEP78,CEP97,CLUAP1,CNGB1,DNAH6,GLI1,HNF1B, IFT140,IFT172,KIF14,KIF24,LRRC6,MAK,MKS1,MORN3,NEK1,NIN, ORC1,PIH1D3,PKD1,PKHD1,PLK1,POC1A,PRKACA,RAB11B,RAB3IP, SAV1,SDCCAG8,SSNA1,TCTN1,TMEM138,ZMYND10 |
| BAKKEN2016_WGCNA_12M_M01 | 2025 | 1.827160494 | AHI1,ANKS6,ASAP1,B9D2,C2CD3,CCDC151,CCDC22,CCNO,CYS1, DCTN1,DNAL4,FAM58A,GALNT11,GNAS,KATNB1,KIF3B,KIF3C,KIF5C, KIF7,KIFAP3,MCRS1,NPHP4,OCRL,PEBP1,PPP2R1A,RAB17,RSPH1, SNX10,SSX2IP,STIL,TCTN3,TRIM32,TTBK2,TTC17,TUBA4A,TUBGCP6, WRAP73 |
| BAKKEN2016_WGCNA_12M_M02 | 588 | 2.040816327 | CETN2,DNAH5,DNAL1,FGFR1OP,KIF17,MCHR1,PDE6D,PLK4,RABL5, ROPN1L,TEKT1,TUBB |
| BAKKEN2016_WGCNA_12M_M03 | 918 | 2.178649237 | AKAP9,ARL6,CEP19,CEP76,EFCAB7,IFT57,INVS,KIF3A,LRRC49,LZTFL1, MKKS,PRKAR2B,RPGRIP1L,RSPH3,SPA17,SPAG6,SPATA7,TMEM17, USP9X,WDR60 |
| BAKKEN2016_WGCNA_12M_M04 | 615 | 1.300813008 | ADCY6,CCDC28B,DZIP1,GSK3A,HTT,INPP5E,IQCE,MARK4 |
| BAKKEN2016_WGCNA_12M_M05 | 671 | 2.682563338 | BBS7,CENPF,CTTN,GPR161,IFT122,INPP5B,MDM1,NME7,NUBP1, NUBP2,PHF17,RDH12,RSPH4A,SPAG1,SYNE2,TMEM67,TTC21A,TTC25 |
| BAKKEN2016_WGCNA_12M_M06 | 289 | 0.692041522 | MERTK,TBX3 |
| BAKKEN2016_WGCNA_12M_M07 | 431 | 1.856148492 | ATXN10,B9D1,CC2D2A,DCDC2,HSPB11,KCNJ13,NEK2,PTCH1 |
| BAKKEN2016_WGCNA_12M_M08 | 1773 | 1.861252115 | ALMS1,BBS2,CNTROB,CRB1,CROCC,DNAI1,DNALI1,EVC2,FOXJ1, GLI3,GNAI2,HYDIN,KIAA0586,NPHP3,ODF2,PACRG,PARD3, RAB11FIP3,RFX2,RILPL2,RSG1,2-SEP,SMO,SUFU,TMEM107,TMEM216, TMEM231,TPRA1,TUBB2B,TULP3,ZIC2 |
| BAKKEN2016_WGCNA_12M_M09 | 1157 | 2.679343129 | ARF4,ARL2BP,BBS10,BBS5,CEP120,CSPP1,EFHC1,FAM161A,IFT52,IFT74, IFT80,IQUB,KIF2A,LCA5,LRAT,MLF1,MNS1,PAFAH1B1,PIK3R4,RAB11A, RAB28,RFX3,RP2,SPICE1,TAPT1,TEX9,TTC30A,TTC8,TUBE1,WDR19, WDR35 |
| BAKKEN2016_WGCNA_12M_M10 | 1664 | 2.584134615 | ARL13B,CCDC14,CEP104,CEP135,CEP152,CEP170,CEP250,CEP290, CEP63,CEP89,CETN3,CP110,CRB3,GNAI3,HEATR2,IFT88,IQCB1,KIF27, MAL,MAPRE1,MST1,MXI1,NEK9,OFD1,PCM1,PKD2,POC1B,POMGNT1, PRKACB,PTK7,PTPDC1,RAB23,RPE65,RTTN,SASS6,7-SEP,SPAG16, STK3,STK38L,STK39,TRIP11,TTC30B,WNK1 |
| BAKKEN2016_WGCNA_48M_M00 | 2109 | 2.038880986 | ANO2,ARL2BP,BBS4,BBS7,BBS9,CENPJ,CEP135,CEP192,CEP97,CNGB1, CSPP1,EFCAB7,EFHC1,FGFR1OP,HNF1B,IQUB,KIAA0586,KIF14,KIF24, KIF27,LRAT,MNS1,NEK1,NME7,ORC1,PDE6D,PHF17,PIH1D3,PKHD1, PLK1,PLK4,RAB11A,RAB11B,RAB3IP,RPGRIP1L,SAV1,SDCCAG8,SPAG1, SUFU,TEX9,TMEM138,TMEM67,WDR19 |
| BAKKEN2016_WGCNA_48M_M01 | 2217 | 2.390617952 | AHI1,AIPL1,AKAP9,ARL6,ASAP1,C2CD3,CCNO,CEP19,CEP76,CYS1, DNAL1,DNAL4,FAM58A,GALNT11,GNAS,GSK3A,HTT,IFT57,INPP5E, INVS,IQCE,KATNB1,KIF3A,KIF3B,KIF3C,KIF5C,KIF7,KIFAP3,LRRC49, LZTFL1,MARK4,MORN3,OCRL,PEBP1,PRKACA,RAB17,ROPN1L, RSPH1,RSPH3,SNX10,SPA17,SPAG6,SPATA7,SSX2IP,STIL,TCTN3, TMEM17,TRIM32,TTBK2,TTC17,TTC25,TUBA4A,USP9X |
| BAKKEN2016_WGCNA_48M_M02 | 570 | 2.280701754 | CEP78,CETN2,CLUAP1,DCDC2,DNAH5,DZIP1,IFT52,KIF17,LRRC6, MCHR1,PRKAR2B,RABL5,TEKT1 |
| BAKKEN2016_WGCNA_48M_M03 | 1382 | 1.374819103 | ADCY6,ANKS6,B9D2,CCDC151,CCDC22,CCDC28B,DCTN1,DNAH6, IFT140,IFT172,INPP5B,MCRS1,NPHP4,PKD1,POC1A,TTC21A,TUBB, TUBGCP6,WRAP73 |
| BAKKEN2016_WGCNA_48M_M04 | 744 | 1.747311828 | AURKA,CENPF,CTTN,GPR161,IFT122,MDM1,MKKS,NUBP1, NUBP2,PPP2R1A,RDH12,SYNE2,WDR60 |
| BAKKEN2016_WGCNA_48M_M05 | 433 | 1.385681293 | B9D1,BUB1B,CC2D2A,GLI1,NEK2,ZMYND10 |
| BAKKEN2016_WGCNA_48M_M06 | 426 | 2.112676056 | ARMC4,BBS2,CROCC,HSPB11,KCNJ13,MERTK,ODF2,PTCH1,TBX3 |
| BAKKEN2016_WGCNA_48M_M07 | 1630 | 2.024539877 | ALMS1,CEP250,CRB1,DNAI1,DNALI1,EVC2,FOXJ1,GLI3,GNAI2,GNAI3, MAPRE1,MXI1,NIN,NPHP3,PACRG,PARD3,PTK7,RAB11FIP3,RAB23, RFX2,RILPL2,RSG1,2-SEP,SMO,TCTN1,TMEM107,TMEM216,TMEM231, TRIP11,TTC30B,TUBB2B,TULP3,ZIC2 |
| BAKKEN2016_WGCNA_48M_M08 | 719 | 1.529902643 | ARF4,ATXN10,BBS5,IFT80,MLF1,PIK3R4,RAB28,RFX3,RSPH4A,TUBE1, WDR35 |
| BAKKEN2016_WGCNA_48M_M09 | 812 | 3.448275862 | ARL13B,BBS10,CCDC14,CEP120,CEP170,CEP290,CEP350,CEP63,CETN3, CP110,FAM161A,HYDIN,IFT74,IFT88,KIF2A,LCA5,MAK,PCM1,POC1B, RP2,RPE65,SASS6,7-SEP,SPICE1,STK38L,TAPT1,TTC30A,TTC8 |
| BAKKEN2016_WGCNA_48M_M10 | 1399 | 1.858470336 | CEP104,CEP128,CEP152,CEP72,CEP89,CNTROB,CRB3,HEATR2,IQCB1, MAL,MKS1,MST1,NEK9,OFD1,PAFAH1B1,PKD2,POMGNT1,PRKACB, PTPDC1,RTTN,SPAG16,SSNA1,STK3,STK39,TPRA1,WNK1 |
|
Modules with significant enrichment of ciliopathy genes are highlighted (adj P values are below) BAKKEN2016_WGCNA_E40_M07 4.852e-7; BAKKEN2016_WGCNA_E50_M06 7.030e-9; BAKKEN2016_WGCNA_E70_M06 3.500e-7; BAKKEN2016_WGCNA_E80_M12 2.399e-6; BAKKEN2016_WGCNA_E90_M11 3.492e-29; BAKKEN2016_WGCNA_E120_M07 1.004e-41 | |||
| b | |||
| Ciliopathy and cilia associated genes | |||
| ADCY3, ADCY6, AHI1, AIPL1, AK7, AKAP9, ALMS1, ANKRD26, ANKS3, ANKS6, ANO2, ARF4, ARL13B, ARL2, ARL2BP, ARL3, ARL6, ARMC4, ASAP1, ATXN10, AURKA, B9D1, B9D2, BBIP1, BBS1, BBS10, BBS12, BBS2, BBS4, BBS5, BBS7, BBS9, BUB1B, C10ORF107, C11ORF49, C21ORF2, C21ORF59, C2CD3, C2ORF71, C5orf42, C8orf37, CATIP, CBY1, CC2D2A, CCDC103, CCDC112, CCDC114, CCDC13, CCDC14, CCDC151, CCDC18, CCDC22, CCDC28B, CCDC37, CCDC39, CCDC40, CCDC63, CCDC65, CCDC66, CCDC88A, CCNO, CDK5RAP2, CDKL5, CENPF, CENPJ, CEP104, CEP120, CEP128, CEP131, CEP135, CEP152, CEP162, CEP164, CEP170, CEP19, CEP192, CEP250, CEP290, CEP350, CEP41, CEP63, CEP72, CEP76, CEP78, CEP83, CEP89, CEP97, CETN1, CETN2, CETN3, CFAP126, CFAP161, CFAP20, CFAP36, CFAP410, CFAP52, CFAP53, CFAP54, CFAP57, CFAP58, CFAP61, CLUAP1, CNGA1, CNGA2, CNGA4, CNGB1, CNTROB, CP110, CPLANE2, CRB1, CRB3, CROCC, CRX, CSNK1D, CSPP1, CTTN, CYS1, DCDC2, DCTN1, DDX59, DISC1, DNAAF1, DNAAF2, DNAAF3, DNAAF4, DNAAF5, DNAH1, DNAH10, DNAH11, DNAH2, DNAH5, DNAH6, DNAH9, DNAI1, DNAI2, DNAJB13, DNAL1, DNAL4, DNALI1, DPCD, DRC1, DRC3, DVL1, DYNC2H1, DYNC2LI1, DYNLT1, DYX1C1, DZIP1, EFCAB7, EFHC1, EFHC2, EVC, EVC2, EXOC4, FAM161A, FAM58A, FBF1, FGFR1OP, FIGNL1, FLCN, FOPNL, FOXJ1, FTO, FUZ, GALNT11, GAS8, GDI2, GLI1, GLI2, GLI3, GLIS2, GNAI2, GNAI3, GNAS, GPBAR1, GPR161, GSK3A, GUCY2D, HEATR2, HNF1B, HSPB11, HTR6, HTT, HYDIN, HYLS1, ICK, IFT122, IFT139, IFT140, IFT172, IFT20, IFT27, IFT43, IFT46, IFT52, IFT57, IFT74, IFT80, IFT81, IFT88, IMPDH1, INPP5B, INPP5E, INTU, INVS, IQCB1, IQCE, IQCG, IQUB, KATNB1, KCNJ13, KIAA0556, KIAA0586, KIAA0753, KIAA1217, KIF11, KIF14, KIF17, KIF19, KIF24, KIF27, KIF2A, KIF3A, KIF3B, KIF3C, KIF5C, KIF7, KIFAP3, KIZ, LCA5, LRAT, LRRC49, LRRC6, LUZP1, LZTFL1, MAK, MAL, MAPRE1, MARK4, MCHR1, MCIDAS, MCRS1, MDM1, MERTK, MKKS, MKS1, MLF1, MNS1, MOK, MORN3, MST1, MXI1, MYB, NEK1, NEK2, NEK4, NEK8, NEK9, NIN, NINL, NME5, NME7, NME8, NMNAT1, NOTO, NPHP1, NPHP2, NPHP3, NPHP4, NPHP5, NPHP7, NPHP9, NUBP1, NUBP2, OCRL, ODF2, OFD1, ORC1, OSR1, PACRG, PAFAH1B1, PARD3, PCARE, PCM1, PCNT, PDE6D, PEBP1, PHF17, PIBF1, PIFO, PIH1D3, PIK3R4, PKD1, PKD2, PKD1L1, PKD2L1, PKHD1, PLK1, PLK4, POC1A, POC1B, POC5, POMGNT1, PPP1R32, PPP2CA, PPP2R1A, PRKACA, PRKACB, PRKAR1A, PRKAR2A, PRKAR2B, PROSER3, PTCH1, PTK7, PTPDC1, RAB11A, RAB11B, RAB11FIP3, RAB17, RAB23, RAB28, RAB29, RAB3IP, RAB8A, RABL5, RD3, RDH12, RFX2, RFX3, RILPL1, RILPL2, ROPN1, ROPN1L, RP1, RP1L1, RP2, RPE65, RPGR, RPGRIP1, RPGRIP1L, RSG1, RSPH1, RSPH14, RSPH3, RSPH4A, RSPH9, RTTN, SASS6, SAV1, SAXO1, SCLT1, SDCCAG8, SEPT2, SEPT7, SLC47A2, SLC4A1, SMO, SNAP25, SNX10, SPA17, SPAG1, SPAG16, SPAG17, SPAG6, SPATA7, SPEF1, SPEF2, SPICE1, SSNA1, SSTR3, SSX2IP, STIL, STK3, STK36, STK38L, STK39, STOML3, STX3, SUFU, SYNE2, TAPT1, TBC1D31, TBC1D32, TBC1D7, TBX3, TCTEX1D2, TCTN1, TCTN2, TCTN3, TEKT1, TEKT2, TEKT3, TEKT4, TEKT5, TEX9, TMEM107, TMEM138, TMEM17, TMEM216, TMEM231, TMEM237, TMEM67, TMEM80, TOPORS, TPRA1, TRAF3IP1, TRIM32, TRIP11, TTBK2, TTC17, TTC21A, TTC21B, TTC25, TTC26, TTC29, TTC30A, TTC30B, TTC8, TTLL3, TTLL5, TTLL6, TTLL9, TUB, TUBA1A, TUBA1C, TUBA4A, TUBB, TUBB2A, TUBB2B, TUBB3, TUBE1, TUBGCP6, TULP1, TULP3, ULK4, UNC119, USP33, USP9X, VHL, WDPCP, WDR19, WDR34, WDR35, WDR60, WDR62, WDR78, WNK1, WNK4, WRAP73, XPNPEP3, ZIC2, ZMYND10, ZNF423. | |||
Names of the modules from different embryonic and postnatal ages, total number of genes in each module, % of cilia-related genes in the module, and the ciliary genes in each of the modules are listed in table (a). For a listing of all the genes in different modules, see (Bakken et al., 2016). All the cilia related genes used in this analysis are listed in table (b).
Table (b) compiled from Guo, J., Higginbotham, H., Li, J., Nichols, J., Hirt, J., Ghukasyan, V., & Anton, E. S. (2015). Developmental disruptions underlying brain abnormalities in ciliopathies. Nature Communications, 6(7857). doi:10.1038/ncomms8857; Reiter, J. F., & Leroux, M. R. (2017). Genes and molecular pathways underpinning ciliopathies. Nature Reviews. Molecular Cell Biology, 18(9), 533–547. doi:10.1038/nrm.2017.60.