Table 1. SIMCoV parameter settings used for each patient; RMSLE for the simulation averaged over 10 runs and RMSLE for the ODE.

Patient	T Cell Generation Rate (1000 T cells/min)	T Cell Onset (days)	Initial Sites of Infection	Viral Clearance	SIMCoV RMSLE	ODE RMSLE
A	200	8	220	0.003	1.98	1.79
B	160	7	150	0.003	2.58	2.55
C	90	5	1	0.003	2.31	2.05
D	120	6	40	0.005	2.65	1.62
E	120	10	10	0.003	3.75	3.40
F	150	9	80	0.003	2.30	1.92
G	90	6.5	50	0.004	3.54	2.88
H	160	6	3	0.004	2.30	1.82