Table 3.
Representative pigmentation-related genes differentially expressed in each compared groups.
Gene name | Description | YR1d-vs-YR45d | YR1d-vs-YR90d | YR45d-vs-YR90d | |||
---|---|---|---|---|---|---|---|
Log2 (FC) | FDR | Log2 (FC) | FDR | Log2 (FC) | FDR | ||
Pteridine synthesis | |||||||
GCH1 | GTP cyclohydrolase 1 | 2.27 | 1.18E − 68 | 3.17 | 4.60E − 165 | 0.89 | 6.31E − 12 |
SLC2A11 | Solute carrier family 2 member 11 | 2.44 | 2.78E − 48 | 3.30 | 4.08E − 110 | 0.86 | 6.15E − 09 |
CSF1R1 | Colony-stimulating factor 1 receptor 1 | 2.75 | 5.38E − 92 | 3.48 | 4.77E − 123 | 0.73 | 1.12E − 12 |
PTS | Pyruvoyl tetrahydrobiopterin synthase | 1.16 | 1.67E − 14 | 2.00 | 1.76E − 45 | 0.83 | 2.11E − 07 |
QDPR | Dihydropteridine reductase | 2.14 | 3.37E − 70 | 1.94 | 8.60E − 33 | − 0.21 | 0.78 |
SOX5 | Transcription factor sox-5 | − 1.87 | 3.34E − 06 | − 2.40 | 4.28E − 08 | − 0.52 | 0.54 |
PAX3 | Paired box protein pax-3 | − 3.97 | 3.10E − 32 | − 5.08 | 3.10E − 23 | − 1.39 | 0.32 |
Carotenoid synthesis | |||||||
SCARB1 | Scavenger receptor class B member 1 | 2.07 | 2.27E − 16 | 2.96 | 6.16E − 32 | 0.89 | 2.82E − 08 |
DGAT2 | Diacylglycerol O-acyltransferase 2 | 3.50 | 6.98E − 52 | 6.78 | 9.27E − 152 | 3.29 | 9.50E − 55 |
PNPLA2 | Patatin-like phospholipase protein 2 | 3.68 | 6.77E − 11 | 4.42 | 2.26E − 15 | 0.74 | 0.02 |
APOD | Apolipoprotein D | 5.58 | 0.00 | 5.68 | 0.00 | 0.10 | 0.16 |
BCO2 | Beta,beta-carotene 9′,10′-oxygenase | 1.69 | 0.01 | 2.35 | 8.21 × 10−4 | − 1.04 | 0.31 |
Melanin synthesis | |||||||
TYR | Tyrosinase precursor | 1.84 | 1.14E − 62 | 1.86 | 1.43E − 56 | 0.03 | 0.43 |
TYRP1 | Tyrosinase-related protein 1 | 1.86 | 1.40E − 89 | 2.72 | 3.67E − 121 | 0.86 | 4.78E − 12 |
DCT | l-Dopachrome tautomerase | 3.31 | 2.04E − 95 | 4.17 | 1.69E − 136 | 0.86 | 7.76E − 14 |
MITF | Microphthalmia transcription factor | 1.62 | 4.82E − 14 | 1.99 | 4.38E − 34 | 0.36 | 0.09 |
MC1R | Melanocortin 1 receptor | 2.25 | 7.36E − 35 | 1.70 | 3.87E − 12 | − 0.55 | 0.10 |
PMEL | Melanocyte protein | − 6.02 | 5.21E − 122 | − 6.67 | 4.13E − 93 | − 0.64 | 0.61 |
SLC45A2 | Solute carrier family 45 member 2 | 1.80 | 2.58E − 37 | 2.23 | 2.97E − 49 | 0.43 | 3.17 × 10−3 |
OCA2 | P protein | 2.10 | 6.43E − 37 | 2.96 | 7.23E − 73 | 0.86 | 1.50E − 11 |
GPR143 | G-protein coupled receptor 143 | 2.03 | 2.05E − 29 | 2.91 | 2.56E − 55 | 0.88 | 2.95E − 08 |
KITA | Stem cell growth factor receptor kita | 3.22 | 3.23E − 65 | 2.60 | 2.16E − 27 | − 0.62 | 0.02 |
SLC7A11 | Cystine/glutamate transporter | − 3.92 | 2.16E − 14 | − 6.60 | 5.69E − 11 | − 2.67 | 0.17 |