. 2021 Nov 26;23(2):159–174. doi: 10.1111/mpp.13117

TABLE 4.

Properties of RNAseq libraries from Xcc strain 8004 wild‐type and derivatives grown in vitro or harvested from cauliflower hydathodes

RNA size	Strain	Condition	Biological replicates	Number of raw reads	Uniquely mapped reads Xcc and Brassica (%)^a	Hits Brassica genes (%)^b	Hits Xcc genes (%)^c	Accession^d
Long RNAs fraction	8004	MOKA	3	22 503 680	93.58	–	9,472	SRR12603737
				31 781 601	88.67	–	9,449	SRR12603738, SRR12603725
				29 317 932	88.54	–	9,421	SRR12603739, SRR12603726
Small RNAs fraction			3	14 141 422	–	–	–	SRR12603734
				13 443 960	–	–	–	SRR12603735
				13 423 070	–	–	–	SRR12603736
Long RNAs fraction	8004::hrpG*	MOKA	3	21 746 450	9,587	–	9,358	SRR12603727
				14 282 665	94.84	–	9,411	SRR12603728
				15 932 094	95.08	–	9,457	SRR12603729
Small RNAs fraction			4	10 314 675	–	–	–	SRR12603720
				11 898 842	–	–	–	SRR12603721
				10 794 476	–	–	–	SRR12603722
				14 113 815	–	–	–	SRR12603733
	8004	Cauliflower hydathodes 4 hpi	3	158 422 507	33.42	6,245	1,332	SRR12603813, SRR12603814, SRR12603815
				150 271 178	23.49	6,621	1,063	SRR12603810, SRR12603811, SRR12603812
				173 591 985	41.15	6,794	1,012	SRR12603804, SRR12603805, SRR12603806
	8004	Cauliflower hydathodes 72 hpi	3	164 579 058	38.59	5,519	1,640	SRR12603816, SRR12603817, SRR12603818
				163 894 181	38.47	5,256	2,727	SRR12603801, SRR12603802, SRR12603803
				143 337 188	27.63	73.48	1.61	SRR12603807. SRR12603808, SRR12603809

^{^a}

Percentage of raw reads mapped uniquely to the sequences of Xcc strain 8004 chromosome (Genbank accession number CP000050.1), Brassica oleracea nuclear and mitochondrial genomes (Accession GCA_000695525.1, NC_016118.1), and Brassica rapa chloroplastic genome (BRARA_CHL, accession NC_040849.1).

^{^b}

Percentage of unique hits to the genes of Brassica oleracea nuclear and mitochondrial genomes and Brassica rapa chloroplastic genome.

^{^c}

Percentage of unique hits to the genes of Xcc strain 8004.

^{^d}

Sequence Read Archive accession number.