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. 2021 Nov 26;7(11):000695. doi: 10.1099/mgen.0.000695

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© 2021 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.

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Fig. 3. — Quality assessment of the assemblers: (a) the genome fraction; (b) the average number of indels per 100 000 aligned bases; (c) the average number of mismatches per 100 000 aligned bases according to the assembly contigs mapping to the reference MTB strain H37Rv. The sample exhibiting a higher number of mismatches after correction of the Canu assembly is indicated with a dashed circle (QC-7).