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. 2021 Nov 18;7(11):000703. doi: 10.1099/mgen.0.000703

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© 2021 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.

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Fig. 4. — The distribution of antimicrobial resistance elements within the K. pneumoniae isolates from QECH. The phylogeny is based on a core genome SNP alignment of the Malawian isolates (n=86), and the branches are labelled with the ST. The panel adjoining the phylogeny shows the antimicrobial resistance phenotype and the absence/presence of key antimicrobial resistance genes and plasmids amongst the isolates. Beta-lactamase genes: bla _CTXM, bla _TEM, bla _OXA, bla _SHV. Quinolone resistance genes: aac3, aac6. Streptomycin resistance gene: strAB. Sulphonamide resistance gene: sul1. Chloramphenicol resistance genes: cat1, cat2. Tetracycline resistance gene: tetA. Aminoglycoside resistance genes: aadA, aad1. Trimethoprim resistance genes: dfrA1, dfrA2, dfrA14. Macrolide resistance gene: mph.