Table 1.
Mean number and size of LCRs relative to each reference genome
|
Total number of LCRs |
||||
|---|---|---|---|---|
|
Reference |
Lineage Ia |
Lineage Ic |
Lineage I/II |
Lineage II |
|
9000 |
18 |
36 |
2 |
43 |
|
Sakai |
15 |
47 |
2 |
38 |
|
TW14359 |
13 |
47 |
2 |
34 |
|
180 |
13 |
43 |
4 |
41 |
|
Mean |
14.75 |
43.25 |
2.5 |
39 |
|
LCRs per lineage/strain |
||||
|
9000 |
1.64 |
1.16 |
0.2 |
2.15 |
|
Sakai |
1.36 |
1.52 |
0.2 |
1.9 |
|
TW14359 |
1.18 |
1.52 |
0.2 |
1.7 |
|
180 |
1.18 |
1.39 |
0.4 |
2.05 |
|
Mean |
1.34 |
1.4 |
0.25 |
1.95 |
|
Average LCR size (bp) |
||||
|
9000 |
109705 |
376229 |
126954 |
110504 |
|
Sakai |
151151 |
143497 |
142760 |
114507 |
|
TW14359 |
155589 |
134568 |
149038 |
127925 |
|
180 |
131237 |
144404 |
119660 |
128622 |
|
Mean |
136920 |
199675 |
134603 |
120390 |