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. 2021 Nov 23;7(11):000677. doi: 10.1099/mgen.0.000677

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© 2021 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution NonCommercial License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.

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Fig. 5. — Maximum-likelihood phylogenetic tree of 164 Salmonella genomes isolated from patients in rural Gambia between 2008 and 2016. Seven distinct clades were resolved from the tree and denoted by different colours (see key). Metadata are shown alongside the phylogenetic tree and include host sex and disease status. The serovars and most prevalent STs are annotated on the tree and denoted using different colours. The tree was rooted on the Salmonella Paratyphi C isolate.