Table 3.
Summary of resistance and plasmid genes in each serovar
|
Clade |
Serovar |
Gene name |
Total (%) |
Plasmid genes |
Total (%) |
|---|---|---|---|---|---|
|
A |
Dublin |
fosA7_1 |
1/14 (7.1) |
IncFII(S)_1 |
14/14 (100) |
|
|
|
|
IncI1_1_Alpha |
1/14 (7.1) |
|
|
|
|
|
IncX1_1 |
14/14 (100) |
|
|
B |
Enteritidis |
aph(3'')-Ib_5 |
45/49 (91.8) |
ColpVC_1 |
1/49 (2.1) |
|
|
|
aph(6)6-Id_1 |
45/49 (91.8) |
IncFIB(S)_1 |
2/49 (4.1) |
|
|
|
blaTEM-1B_1 |
49/49 (100) |
IncFII(S)_1 |
2/49 (4.1) |
|
|
|
catA1_1 |
46/49 (93.8) |
IncI1_1_Alpha |
47/49 (95.9) |
|
|
|
dfrA7_5 |
46/49 (93.8) |
IncQ1_1 |
45/49 (91.8) |
|
|
|
sul1_5 |
46/49 (93.8) |
rep21_9_rep(pKH12) |
2/49 (4.1) |
|
|
|
sul2_6 |
45/49 (91.8) |
|
|
|
|
|
tet(B)_2 |
46/49 (93.8) |
|
|
|
C |
Typhimurium |
aph(3'')-Ib_5 |
3/19 (15.8) |
IncFIB(S)_1 |
18/19 (94.7) |
|
|
|
aph(6)6-Id_1 |
3/19 (15.8) |
IncFII(S)_1 |
18/19 (94.7) |
|
|
|
blaTEM-1B_1 |
3/19 (15.8) |
IncQ1_1 |
1/19 (5.3) |
|
|
|
catA1_1 |
3/19 (15.8) |
|
|
|
|
|
dfrA7_5 |
3/19 (15.8) |
|
|
|
|
|
sul1_5 |
3/19 (15.8) |
|
|
|
|
|
sul1_3 |
3/19 (15.8) |
|
|
|
|
|
fosA7_1 |
1/19 (5.3) |
|
|
|
|
Stanleyvelle |
fosA7_1 |
2/2 (100) |
|
|
|
D |
Hofit |
fosA7_1 |
1/1 (100) |
IncFIB(S)_1 |
1/1 (100) |
|
|
|
|
IncFII(S)_1 |
1/1 (100) |
|
|
E |
Virchow |
No gene |
pSL483_1 |
1/7 (14.3) |
|
|
F |
Typhi |
catA1_1 |
2/27 (7.4) |
No plasmid |
|
|
|
|
dfrA7_5 |
2/27 (7.4) |
|
|
|
|
|
sul1_5 |
2/27 (7.4) |
|
|
|
G |
Others: |
|
|
||
|
|
Mountpleasant |
fosA7_1 |
1/41 (100) |
IncFII(S)_1 |
2/41 (4.8) |
|
|
Senftenberg |
fosA7_1 |
1/41 (100) |
IncFII(pCoo)_1_pCoo |
1/41 (2.4) |
|
|
Grumpensis |
fosA7_1 |
1/41 (100) |
|
|
|
|
Paratyphi C |
fosA7_1 |
1/1 (100) |
IncFIB(S)_1 |
1/1 (100) |
|
|
|
|
IncFII(S)_1 |
1/1 (100) |