Table 3.
Pairwise interlocus linkage disequilibrium and recombination analysis of concatenated multilocus sequences from 188 Scedosporium aurantiacum strains.
| Population | No. segregating sites analysed | No. pairwise comparisons | No. of pairs of sites with four gametic types | No. of significant pairwise comparisons† | Zns* | Linkage disequilibrium (LD) value|D’| | Estimate of R/gene | Minimum no. recombination events (Rm) |
|---|---|---|---|---|---|---|---|---|
| All** | 74 | 2556 | 1181 | 798 (229) | 0.0505 | Y = 0.8257 - 0.0970X | 59.4 | 17 |
| ACT | 12 | 55 | 3 | 35 (23) | 0.1585 | Y = 1.0310 - 0.2161X | 16 | 1 |
| CAL | 5 | 6 | 0 | 2 (2) | 0.0337 | Y = 1.0000 - 0.0000X | 117 | 0 |
| EF1a | 13 | 66 | 6 | 18 (10) | 0.0772 | Y = 0.9131 + 0.2146X | 4.6 | 2 |
| RPB2 | 18 | 153 | 19 | 99 (71) | 0.1571 | Y = 0.9738 - 0.0082X | 22.3 | 3 |
| SOD2 | 18 | 153 | 30 | 97 (67) | 0.2231 | Y = 1.0359 - 0.5977X | 5.5 | 4 |
| TUB | 11 | 55 | 4 | 12 (9) | 0.1318 | Y = 1.0016 - 0.1617X | 0.8 | 1 |
†By Fisher’s exact test (after Bonferroni correction).
*Zns, interlocus genetic association; |D’|, linkage disequilibrium (LD) value, where Y is LD value and X is nucleotide distance in kilobases.
**Based on concatenated multilocus gene sequence of all loci.