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. 2022 Jan 10;23:42. doi: 10.1186/s12864-021-08261-2

Table 1.

Showing number of genes and transcripts differentially expressed between undifferentiated and differentiated cells, after multiple testing correction using ONT long read counts (FDR < 0.05). Bracketed numbers refer to the portion of total that are TALON-identified novel transcripts. U = undifferentiated and D = differentiated cells, with arrows displaying expression directionality

Metric Count
Gene level Transcript level (Talon)
Total features assessed 32,977 99,067 (1855)
Differentially Expressed 4239 5456 (197)
↑U ↓D (all > 0 log2FC) 2041 2390 (67)
↑D ↓U (all < 0 log2FC) 2198 3066 (130)