Table 2.
Multilocus sequence typing
Locus | Primers (specific amplification) | Amplicon size | Polymorphisms |
---|---|---|---|
SOD | F1: AATAAGGGTTTAATTAGTCTT | 762 bp | 110, 191, 215 |
R1: CTTACATTCCATATATTTTCA | 670 bp | ||
F2: GAACCTTATCTTTCTCAT | |||
R2: TCATTTTAGTATTTAGTCTC | |||
mtLSU rRNA | F1: GTGAAAGCCCAGAGTCCC | 1216 bp | 54-57, 80, 85, 248, 288 |
R1: CCGAGTTCCTTCGCAATA | 738 bp | ||
F2: CTTTTGCATAATGGGTCAG | |||
R2: TTTTCGGCGAATAGGATTT | |||
CYB | F1: TATGGTTCATTATCAGGACTG | 1016 bp | 279, 299, 348, 362, 369, 516, 547, 566, 675, 742, 832-833, 838 |
R1: ACCAGAGGAATAACAACTAAG | 942 bp | ||
F2: ACAGATTATTACGGGTGT | |||
R2: GTAGCATATTGTCCAAGC |
SOD, the superoxide dismutase; mtLSU rRNA, mitochondrial large subunit of ribosomal RNA; CYB, cytochrome b.