Table 1.
Contigs and scaffolds of P. palustre.
| ID | Features | Sequencing reads | Value (SOAP) | Value (SPADes) |
|---|---|---|---|---|
| 1 | Total number of bases (Gb) | 63.19 | – | – |
| 2 | Clean reads (Gb) | 54.99 | – | – |
| 3 | Clean reads proportion (%) | 87.02% | – | – |
| 4 | Q20% | 99.43 | – | – |
| 5 | Q30% | 95.31 | – | – |
| 6 | GC content (%) | 40.19% | – | – |
| 7 | Total number of contigs | – | 6,968,859 | 6,783,951 |
| 8 | Assembly length (bp) | – | 1,374,372,218 | 1,335,937,505 |
| 9 | Largest contig size (bp) | – | 61,900 | 62,170 |
| 10 | L50 | – | 1,359,845 | 1,310,596 |
| 11 | N50 (bp) | – | 191 | 193 |
| 12 | Number of SSR identified through MISA | – | 15,498 | – |
| 13 | Number of SSRs tested | – | 90 | – |
| 14 | Number of polymorphic SSR markers | – | 37 | – |