Table 1.
CIAV sequences from GenBank included in this study.
| CIAV Strain | GenBank Accession No. | Country | Genogroup |
|---|---|---|---|
| Del-Ros | AF313470 | USA | IIIb |
| 26P4 | D10068 | USA | IIIb |
| Nobilis P4 vaccine | AJ890284 | The Netherlands | IIIb |
| Cux-1 | M55918 | Germany | IIIb |
| Cuxhaven 1 | M81223 | Germany | IIIb |
| CAU269-7 | AF227982 | Australia | I |
| 3711 | EF683159 | Australia | I |
| BD-3 | AF395114 | Bangladesh | IIIa |
| CAV/Ibadan.NIE/11.02/100 | AJ888519 | Nigeria | II |
| CAV/Lanlate.NIE/11.02/71 | AJ888528 | Nigeria | IIIa |
| Isolate 69 | DQ016140 | Slovenia | IIIa |
| 98D02152 | AF311892 | USA | IIIb |
| Isolate 4 | KJ728816 | Taiwan | IIIb |
| Isolate 6 | KJ728817 | Taiwan | IIIb |
| Isolate 8 | KJ728819 | Taiwan | IIIa |
| Isolate 9 | KJ728820 | Taiwan | IIIa |
| CAV-EG-2 | MH001553 | Egypt | IIIb |
| CAV-EG-11 | MH001559 | Egypt | IIIb |
| CAV-EG-13 | MH001560 | Egypt | IIIb |
| CAV-EG-14 | MH001565 | Egypt | II |
| CAV-EG-26 | MH001564 | Egypt | IIIa |
| CAV/LOD5/13 | KM458172 | Poland | IIIa |
| CAV/MPL2/13 | KM458175 | Poland | IIIa |
| CAV/OPL3/13 | KM458178 | Poland | IIIa |
| CAV/SLA3/13 | KM458182 | Poland | IIIa |
| G17.33.3 | MH536104 | Vietnam | IIIa |
| HB1517 | KU645516 | China | IIIa |
| AH6 | DQ124935 | China | IIIa |
| HLJ15108 | KY486137 | China | IIIa |
| SD1514 | KU645521 | China | IIIa |
| 704 | U65414 | Australia | II |
| 98D06073 | AF311900 | USA | II |
| 1102PT01 | KY888892 | Taiwan | IV |
| 1103TN02 | KY888894 | Taiwan | IV |
| SD22 | DQ141673 | China | IV |
| SD24 | AY999018 | China | IV |
| TN103/11 | MT019547 | Tunisia | II |
| TN 126/16 | MH144347 | Tunisia | II |
| TN200/11 | MT019548 | Tunisia | II |
| TN1021/16 | MT019549 | Tunisia | II |
| TN1340/09 | MT019546 | Tunisia | II |
| TN 1328/09 | MN855395 | Tunisia | II |
| CIAV/IT/CK/909-06/18 | MT813068 | Italy | IIIa |
| CIAV/IT/CK/1196/19 | MT813069 | Italy | IIIa |
| CIAV/IT/CK/1155/19 | MT813070 | Italy | IIIb |
| CIAV/IT/CK/855/17 | MT813071 | Italy | II |
| CIAV/IT/CK/1157/19 | MT813072 | Italy | IIIa |
| CIAV/IT/CK/986-2/18 | MT813073 | Italy | II |
| CIAV/IT/CK/1014-1/18 | MT813081 | Italy | IIIa |
| CIAV/IT/CK/1099/19 | MT813074 | Italy | II |
| CIAV/IT/CK/1153-2/19 | MT813075 | Italy | IIIa |
| CIAV/IT/CK/1180/19 | MT813076 | Italy | IIIb |
| CIAV/IT/CK/1186/19 | MT813077 | Italy | IIIa |
| CIAV/IT/CK/1188/19 | MT813078 | Italy | IIIa |