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[Preprint]. 2022 Jan 4:rs.3.rs-1160075. [Version 1] doi: 10.21203/rs.3.rs-1160075/v1

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Figure 7: — Dynamic analysis of the wildtype 3_6, 3_3, and 3_5 systems. (Left) Dominant motions of the threaded 77-nt 3_6 pseudoknot (RNAComposer), 77-nt 3_3 pseudoknot (iFoldRNA), and 77-nt 3_5 junction (SimRNA) extracted by principal component analysis (PCA). (Right) Flexibility of the three conformations as reflected by root mean square fluctuations (RMSF). For the 3_6 and 3_3 pseudoknots, the RMSF is shown for the common 77-nt region at various lengths; for 3_5 junction, RMSF at 77-nt. The different stem regions are colored and labeled.