Table 1. Spoligotype patterns of 59 M. bovis and one M. caprae strains and their relative frequencies.
SB No. | Spoligotype | No. of strains | Frequency [%] | SIT | Family | |
---|---|---|---|---|---|---|
binary code | octal code | |||||
SB0120 | 1101111101111110111111111111111111111100000 | 676773777777600 | 20 | 33.3 | 482 | BOV_1 |
SB0121 | 1101111101111110111101111111111111111100000 | 676773677777600 | 13 | 21.7 | 481 | BOV_1 |
SB0134 | 1100011101111110111111111111111111111100000 | 616773777777600 | 7 | 11.7 | 665 | BOV_1 |
SB2521 | 1100011101111110111011111111111111111100000 | 616773577777600 | 5 | 8.3 | n.k. | n.k. |
SB0339 | 1101111101111110111101111000011111111100000 | 676773674177600 | 2 | 3.3 | 696 | BOV_1 |
SB0828 | 1101111101111110111111111111111110111100000 | 676773777773600 | 2 | 3.3 | 1047 | BOV_1 |
SB1542 | 1100011100011110111111111111111111111100000 | 616173777777600 | 2 | 3.3 | n.k. | BOV |
SB0119 | 1101111101111100111101111111111111111100000 | 676763677777600 | 1 | 1.7 | 695 | BOV |
SB0818 | 1101111101111110111111111111111101111100000 | 676773777767600 | 1 | 1.7 | 1044 | BOV_1 |
SB0822 | 1100111101111110111111111111111111111100000 | 636773777777600 | 1 | 1.7 | 997 | BOV_1 |
SB0848 | 1101111101110110111101111111111111111100000 | 676733677777600 | 1 | 1.7 | 1010 | BOV_1 |
SB1452 | 1101111000111100111101111111111111111100000 | 674363677777600 | 1 | 1.7 | 1595 | BOV |
SB2520 | 1100011101111110111111111110111111111100000 | 616773777377600 | 1 | 1.7 | n.k. | n.k. |
SB2522 | 1101111101111110111110011111111011111100000 | 676773717757600 | 1 | 1.7 | n.k. | n.k. |
SB2523 | 1101111101111110100111111111111111111100000 | 676772377777600 | 1 | 1.7 | n.k. | n.k. |
SB0835 | 0100000000000000111111111110111011111100000 | 200003777357600 | 1 | 1.7 | 978 | BOV_4 Caprae |
Total | 60 | 100 |
n.k.: not known; SIT: spoligo-international type according to the SITVIT1 nomenclature; BOV: Bovine.
The binary code is represented by 43 digits. The number 0 indicate the absence of signal and the number 1 indicate the presence of signal.