TABLE 3.
Whole genome sequence, sequence type (ST), and epidemiology data for B. pseudomallei complex species, including B. mayonis sp. nov. and B. savannae sp. novg
| Species and strain | GC content (%) | Genome size (Mb) | No. of CDSd | NCBI assembly accession no. | STf | Region of isolation or country | yr | Originating lab |
|---|---|---|---|---|---|---|---|---|
| B. mayonis sp. nov. BDU6T | 66.25 | 6.6a | 5,672 | ASM152374v2e | 1003 | Badu Island, QLD | 2011 | James Cook University |
| B. mayonis sp. nov. BDU8 | 66.47 | 7.4a | 6,368 | ASM152263v2e | 962 | Badu Island, QLD | 2011 | James Cook University |
| B. savannae sp. nov. MSMB266T | 67.05 | 7.4a,c | 6,408 | ASM152444v2e | 646 | Acacia Hills, NT | 2006 | Menzies School of Health and Research |
| B. savannae sp. nov. MSMB852 | 67.32 | 7.1a,c | 6,024 | ASM152462v2e | 1773 | Robin Falls, NT | 2010 | Menzies School of Health and Research |
| B. savannae sp. nov. BDU18 | 67.25 | 7.2b | 6,056 | ASM154691v1 | 963 | Badu Island, QLD | 2011 | James Cook University |
| B. savannae sp. nov. BDU19 | 67.49 | 6.9b | 5,785 | ASM154695v1 | 964 | Badu Island, QLD | 2011 | James Cook University |
| B. singularis MSMB175 | 64.80 | 5.7 | 4,715 | ASM171887v1e | n/a | Australia | 2004 | Menzies School of Health and Research |
| B. humptydooensis MSMB43 | 67.14 | 7.3c | 6,324 | ASM151374v1e | 318 | Australia | 1995 | Menzies School of Health and Research |
| B. thailandensis E264 | 67.60 | 6.7 | 5,652 | ASM1236v1e | 80 | Thailand | 1994 | n/a (external genome) |
| B. oklahomensis C6786 | 66.90 | 7.1 | 6,097 | ASM17037v1 | 81 | United States | 1973 | n/a (external genome) |
| B. pseudomallei K96243 | 68.05 | 7.2 | 5,948 | ASM1154v1e | 10 | Thailand | 1998 | n/a (external genome) |
| B. mallei ATCC 23344 | 68.50 | 5.8 | 5,006 | ASM1170v1 | 40 | Burma | 1944 | n/a (external genome) |
a
PacBio sequencing from this study resulting in a complete genome.
b
PacBio sequencing from this study resulting in four contigs.
c
One plasmid present.
d
CDS = coding DNA sequences.
e
Complete genome assembly available from NCBI.
f
Based on the B. pseudomallei MLST (https://pubmlst.org).
g
Two chromosomes are present for all genomes, and some also include a single plasmid. All B. mayonis sp. nov. and B. savannae sp. nov. strains originated from Australia, and all were isolated from soil. n/a, not applicable.