Table 1.
Recurrent deletion or insertion types (RDT or RIT) for SARS-CoV-2.
| Name | Region | Start position and indels nucleotidesa | Indels of nucleotides | Frequency |
|---|---|---|---|---|
| RDT-nsp1 | nsp1 | pos_686-9 | AAGTCATTT | 1,771 |
| RDT-nsp2-1 | nsp2 | pos_1598-6 | GGTCTT | 528 |
| RDT-nsp2-2 | nsp2 | pos_1605-3 | ATG | 854 |
| RDT-nsp6 | nsp6 | pos_11288-9 | TCTGGTTTT | 228,125 |
| RDT-S-1 | S | pos_21765-6 | TACATG | 220,758 |
| RDT-S-2 | S | pos_21991-3 | TTA | 126,048 |
| RDT-S-3 | S | pos_22029-6 | AGTTCA | 3,931 |
| RDT-S-4 | S | pos_22189-3 | TAT | 556 |
| RDT-S-5 | S | pos_22281-9 | CTTTACTTG | 887 |
| RDT-ORF3a | ORF3a | pos_26155-3 | GTT | 631 |
| RDT-ORF6 | ORF6 | pos_27205-3 | TTT | 1,014 |
| RDT-ORF8 | ORF8 | pos_28254-1 | A | 865 |
| RDT-ORF8/N | IGR8/n | pos_28271-1 | A | 127,020 |
| RDT-N | N | pos_28278-3 | CTG | 1,201 |
| RDT-ORF10 | ORF10 | pos_29582-6 | TTTCCG | 930 |
| RIT-ORF8-1 | ORF8 | pos_28252+2 | TG | 13,744 |
| RIT-ORF8-2 | ORF8 | pos_28255+2 | TC | 861 |
| RIT-ORF8/N | IGR8/n | pos_28263+4 | AACA | 5,582 |
Note: IGR8/n, the intergenic region between ORF8 and N gene; athe number following the ‘-’ and ‘+’ signs indicates the number of deleted and inserted nucleotides, respectively.