Table 6.
The characteristics of candidate genes identified in the QTL regions associated with the seedlings traits: electrolytes leakage (EL), plants recovery (REC), trapped energy flux in PSII reaction centers per leaf cross-section (Tr0/CS), the energy flux for electron transport per leaf cross-section (ET0/CS) and absorbed energy flux per leaf cross-section (ABS/CS) in DH ‘Hewo x Magnat’ lines mapping population studied
| QTL name | Trait/experiment | Flanking marker | Sequence query | Position | Sequence ID (mRNA) | Reference organism | Predicted protein | Predicted function |
|---|---|---|---|---|---|---|---|---|
| Qel.hm-7A.2 | EL-2 EL-3 | tPt-513624 | TraesCS7A03G0506500LC (low confidence) | Chr7A:189,793,060..189793458 (+ strand) | XM_037604689.1 | Triticum dicoccoides | Uncharacterized LOC119331524 transcript var. X2 | BTR1-like protein, mRNA binding, regulation of gene expression |
| Qel.hm-5R.2 | EL-3 | rPt-506350 | SECCE5Rv1G0349830 (high confidence) | Chr5R:686,819,682..686824096 (− strand) | XM_037587241.1 | Triticum dicoccoides | Nucleotide-gated ion channel 14 (LOC119311587) | Voltage-gated potassium channel activity, cyclic nucleotide-gated ion channel, integral component of membrane, transmembrane helical protein |
| Qfr.hm-7A.1 | REC-3 | wPt-0393 | TraesCS4B01G034600 (high confidence) | Chr4B:25,384,962..25394077 (− strand) | XM_037576333.1 | Triticum dicoccoides | Pentatricopeptide repeat-containing protein At4g18520, chloroplastic-like (LOC119299015), transcript var. X1 | PPR protein, involved in chloroplast RNA processing, modification and splicing |
| Qchl.hm-4A.1 | ET0/RC-1 | wPt-2151 | TraesCS4A03G1247800 (high confidence) | Chr4A:752,456,325..752459406 (− strand) | XM_020328553.1 | Aegilopstauschii subsp. strangulata | Uncharacterized LOC109769846 | - |
| Qchl.hm-5B.1 | ABS/CS-3 | wPt-7167 | TraesCS5B03G0735400 (high confidence) | Chr5B:473,178,495..473184426 (− strand) | XM_037586621.1 | Triticum dicoccoides | Uridine kinase-like protein 1, chloroplastic (LOC119310993) | Involved in the pyrimidine salvage pathway |
| Qchl.hm-5R.1 | TR0/CS-2 | rPt-507354 | SECCE5Rv1G0327250 (high confidence) | Chr5R:490,868,494..490871516 (− strand) | XM_037578543.1 | Triticum dicoccoides | Uncharacterized LOC119301557 | Gag-Pol polyprotein/retrotransposon, transmembrane helix protein |
| TR0/CS-1 | rPt-505449 | SECCE5Rv1G0298360 (high confidence) | Chr5R:11,157,843..11168368 (+ strand) | XM_037576070.1 | Triticum dicoccoides | Phosphoinositide phosphatase SAC9 (LOC119298775), transcript var. X3 | Probable phosphoinositide phosphatase that could be involved in stress signaling, phosphoric ester hydrolase activity, phosphatidylinositol metabolic process, response to osmotic stress, integral component of membrane |