Table 6.

Mean results for variation accuracy estimation by comparison with reference Platinum Genome for SNV (PG).

	Protocol	Pool	Total SNV	In PG SNV	Not in PG SNV	PG-specific SNV	Samples-specific SNV	Sensitivity (%)	Precision (%)	F-measure (%)
NA12891 libraries	RSMU_exome	1A + 1B	52,878	52,875	2	2831	1775	99.976	99.995	99.986
	RSMU_exome	2A + 2B	49,251	49,250	1	3733	1652	99.976	99.998	99.987
	MGI	3A + 3B	47,821	47,819	2	5165	1581	99.977	99.996	99.987
Total			49,983	49,981	2	3910	1669	99.977	99.996	99.987

Total SNV-number of bases detected as SNV. In PG SNV-number of bases detected as SNV and being SNV in reference PG. Not in PG SNV-number of bases detected as SNV and being indel in reference PG. PG-specific variations SNV-number of bases that are SNV in reference PG, but not called in our PG at all.