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. 2022 Jan 13;20:16. doi: 10.1186/s12915-021-01221-y

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© The Author(s) 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 7 — Distribution of key vir genes among the putative pTi. The pTi sequences derived from this study are highlighted in bold. For those with relevant information available, the genomospecies assignments are indicated in square brackets and the opine types are indicated in parentheses. Gene presence and absence are indicated by filled and empty circles, respectively. The main vir genes include the components of the type IV secretion system (T4SS; virB1-B11 and virD4). For virE3, the three sequence types are listed separately. For virF and virD3, the sequence types are labeled inside the circles. For 1D1609, the genes virA and virJ are located on another plasmid and plotted as absent in this figure. The locus tags are provided in Supplementary Dataset S1B