REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited data
UKB summary statistics of blood cell traits	Vuckovic et al., 202010	GWAS Catalog: GCST90002379-GCST90002407
CAD meta-GRS	Inouye et al., 201835	PGS Catalog: PGS000018
GWAS summary statistics for schizophrenia	Ruderfer et al., 201836	https://figshare.com/articles/dataset/cdg2018-bip-scz/14672019
GWAS summary statistics for Crohn’s disease	Liu et al., 201537	GWAS Catalog: GCST003044
GWAS summary statistics for rheumatoid arthritis	Okada et al., 201438	GWAS Catalog: GCST002318
GWAS summary statistics for allergic disease	Ferreira et al., 201739	GWAS Catalog: GCST005038
GWAS summary statistics for asthma	Demenais et al., 201840	GWAS Catalog: GCST006862
PGS models	This manuscript	PGS Catalog: PGS000088 - PGS000113
Software and algorithms
R 3.6.3	R Core Team	https://www.r-project.org/
Python 3.6.8	Python Software Foundation	https://www.python.org/
scikit-learn 0.21.2	Pedregosa et al., 201141	https://scikit-learn.org/
Keras 2.1.6	N/A	https://keras.io/
SNPNET	Qian et al., 202042	https://github.com/junyangq/snpnet
LDpred2	Privé et al., 202129	https://privefl.github.io/bigsnpr/articles/LDpred2.html
PLINK 2.0	PLINK Working Group	https://www.cog-genomics.org/plink/2.0/
PLINK 1.9	PLINK Working Group	https://www.cog-genomics.org/plink/1.9/
Bcftools 1.9	N/A	http://samtools.github.io/bcftools/bcftools.html