TABLE 1.
Comparison of assembly statistics of Fusarium oxysporum f. sp. lycopersici isolates
| Characteristic | Data for F. oxysporum f. sp. lycopersici strain: |
||
|---|---|---|---|
| 59 | 4287 | 4287 | |
| Accession no. (database) | PRJNA756266 (BioProject) | GCF_000149955.1 (GenBank assembly) | GCA_003315725.1 (GenBank assembly) |
| Sequencing method | Oxford Nanopore + Illumina | Sanger | PacBio + Illumina |
| Total length (Gbp) | 5.36 | 6.1 | 5.39 |
| No. of contigs | 361 | 1,362 | 504 |
| Coverage (×) | 75.5 | 6.5 | 76 |
| Assembly size (Mb) | 54.2 | 59.9 | 53.9 |
| Longest contig (bp) | 6,457,141 | 5,700,000 | |
| % GC | 47.67 | 48.4 | 47.7 |
| Contig N50 (bp) | 3,035,620 | 95,416 | 1,338,693 |
| Contig L50 | 7 | 184 | 11 |
| Complete BUSCOs (%) | 99.60 | 97.70 | 99.90 |
| Total no. of BUSCOs | 4,494 | 4,494 | 2,294 |
| No. of duplicate BUSCOs | 37 | 40 | 34 |
| No. of fragmented BUSCOs | 0 | 24 | 1 |
| No. of missing BUSCOs | 7 | 78 | 7 |
| Reference | This study | 15 | 14 |