Table 2.
Databases used to generate filtered data for comparison to ScanFold predicted structures
| Source | Description | Reference |
|---|---|---|
| NCBI | RefSeq Functional Elements | (38) |
| SNPedia | Single Nucleotide Polymorphisms | (39) |
| ClinVar | Single Nucleotide Polymorphisms | (40) |
| TargetScan | Single Nucleotide Polymorphisms | (41) |
| miRBase | Single Nucleotide Polymorphisms | (42) |
| ORegAnno | miRNAs and RNA Binding Proteins | (43) |
| Dfam | Repeat Elements | (44) |
| RMBase | RNA Modifications | (45) |
| PolyASite | PolyA sites | (46) |
| ENCODE | RNA Binding Proteins | (47,48) |
| RASP | Biochemical Probing Data | (49) |
Select databases used to download and generate filtered datasets that can be used to create gene specific annotations or loaded directly into IGV-ScanFold. From left to right: name of the database, description of the data obtained, and reference to each database.