Table 2.
Mean and standard deviation of protein backbone RMSD, solvent accessible surface area (SASA), radius of gyration (Rg) and ligand RMSD values calculated from the data of 20 ns MD trajectories of the ST2 receptor in apoprotein form and in complexes with 20 investigated ligands and 2 docking poses of the control compound iST2-1
Complex | RMSD of protein Cbackbone (Å) | SASA (nm2) | Rg (Å) | RMSD of heavy atoms of ligand (Å) |
---|---|---|---|---|
Apoprotein | 3.29 ± 1.15 | 110.40 ± 1.04 | 19.02 ± 0.35 | |
ZINC01951267 | 2.60 ± 0.31 | 110.16 ± 1.02 | 18.57 ± 0.19 | 1.12 ± 0.32 |
ZINC02065976 | 4.58 ± 0.60 | 110.91 ± 1.11 | 19.20 ± 0.28 | 2.80 ± 0.64 |
ZINC02876200 | 2.76 ± 0.29 | 109.95 ± 1.11 | 18.43 ± 0.16 | 2.44 ± 0.71 |
ZINC08444471 | 3.08 ± 0.45 | 110.36 ± 1.17 | 18.62 ± 0.27 | 1.93 ± 0.49 |
ZINC08821844 | 3.28 ± 0.43 | 110.31 ± 1.19 | 19.23 ± 0.16 | 1.68 ± 0.19 |
ZINC08911140 | 4.15 ± 0.91 | 108.91 ± 1.12 | 19.10 ± 0.29 | 0.62 ± 0.27 |
ZINC09090269 | 3.03 ± 0.40 | 109.80 ± 1.06 | 18.96 ± 0.20 | 1.58 ± 0.47 |
ZINC16933127 | 3.04 ± 0.45 | 110.24 ± 1.12 | 18.30 ± 0.19 | 1.92 ± 0.43 |
ZINC20527417 | 2.31 ± 0.28 | 109.75 ± 1.23 | 18.65 ± 0.15 | 2.54 ± 0.60 |
ZINC31554431 | 4.31 ± 0.67 | 109.84 ± 0.99 | 19.14 ± 0.22 | 1.90 ± 0.29 |
ZINC32690934 | 3.72 ± 0.43 | 111.44 ± 0.99 | 19.22 ± 0.19 | 1.66 ± 0.28 |
ZINC39869848 | 3.11 ± 0.44 | 109.80 ± 1.22 | 18.68 ± 0.28 | 1.96 ± 0.39 |
ZINC40622701 | 3.30 ± 0.48 | 109.09 ± 1.08 | 18.96 ± 0.19 | 1.69 ± 0.24 |
ZINC40658091 | 3.07 ± 0.41 | 109.50 ± 1.29 | 18.74 ± 0.14 | 1.60 ± 0.28 |
ZINC40658929 | 2.79 ± 0.34 | 109.08 ± 1.06 | 18.94 ± 0.18 | 1.60 ± 0.42 |
ZINC40659076 | 2.23 ± 0.23 | 108.71 ± 1.15 | 18.87 ± 0.15 | 1.92 ± 0.63 |
ZINC40659148 | 3.74 ± 0.68 | 111.05 ± 1.61 | 19.12 ± 0.31 | 2.02 ± 0.42 |
ZINC40659221 | 3.00 ± 0.46 | 110.23 ± 1.02 | 18.78 ± 0.18 | 1.91 ± 0.36 |
ZINC59502934 | 2.57 ± 0.31 | 109.36 ± 1.03 | 18.69 ± 0.17 | 1.79 ± 0.25 |
ZINC59514725 | 3.27 ± 0.41 | 108.82 ± 1.09 | 18.24 ± 0.31 | 1.34 ± 0.25 |
iST2-1 (pose 2) | 2.72 ± 0.25 | 108.80 ± 1.45 | 18.56 ± 0.21 | 2.01 ± 0.63 |
iST2-1 (pose 3) | 2.81 ± 0.74 | 110.07 ± 1.11 | 18.82 ± 0.24 | 1.69 ± 0.65 |