Table 3.
Number and occupancy frequencies of hydrogen bonds of the top four hit compounds and the control compound iST2-1 calculated using the data of the last 50 ns of 100 ns simulations trajectories
Compound | Number of hydrogen bonds formed in each frame | Donor | Acceptor | Occupancy (%) |
---|---|---|---|---|
ZINC08911140 | 3.09 ± 1.12 | ARG198-Side-NH1 | LIG209-Side-O4 | 93.2 |
LYS127-Side-NZ | LIG209-Main-O | 49 | ||
LYS127-Side-NZ | LIG209-Side-O4 | 44.3 | ||
ARG198-Side-NH2 | LIG209-Side-O4 | 38 | ||
ARG198-Side-NH2 | LIG209-Main-O | 36.4 | ||
LYS130-Side-NZ | LIG209-Side-O1 | 19.7 | ||
ARG198-Side-NH1 | LIG209-Main-O | 16.9 | ||
ZINC16933127 | 4.63 ± 1.36 | ARG38-Side-NH1 | LIG209-Side-O4 | 80.4 |
ARG38-Side-NH1 | LIG209-Side-O1 | 72 | ||
ARG38-Side-NE | LIG209-Side-O4 | 66.1 | ||
GLN39-Main-N | LIG209-Side-O6 | 53.9 | ||
LIG209-Side-O5 | GLN23-Main-O | 39.8 | ||
ARG38-Side-NE | LIG209-Side-O1 | 38.5 | ||
ARG96-Side-NH2 | LIG209-Side-O4 | 19.4 | ||
LYS22-Side-NZ | LIG209-Side-O3 | 17.2 | ||
LYS22-Side-NZ | LIG209-Main-O | 16 | ||
GLN39-Main-N | LIG209-Side-O2 | 14.2 | ||
ARG96-Side-NH2 | LIG209-Side-O1 | 11.7 | ||
ZINC40658091 | 4.15 ± 1.38 | LIG209-Side-N2 | SER21-Main-O | 93.3 |
LYS22-Side-NZ | LIG209-Side-O4 | 50.4 | ||
LYS22-Side-NZ | LIG209-Main-O | 46 | ||
ARG38-Main-N | LIG209-Main-O | 43.6 | ||
ARG38-Main-N | LIG209-Side-O4 | 34.8 | ||
ARG35-Side-NH1 | LIG209-Side-O4 | 27.3 | ||
ARG35-Side-NH1 | LIG209-Main-O | 24.8 | ||
ARG35-Side-NE | LIG209-Side-O4 | 21.2 | ||
ARG35-Side-NH2 | LIG209-Side-O4 | 13.2 | ||
ZINC59514725 | 4.46 ± 1.03 | LYS22-Side-NZ | LIG209-Side-O5 | 96.5 |
ARG35-Side-NE | LIG209-Side-O5 | 89.9 | ||
ARG38-Side-NH1 | LIG209-Main-O | 59.8 | ||
ARG38-Side-NE | LIG209-Main-O | 55.1 | ||
ARG38-Side-NH1 | LIG209-Side-O4 | 43.1 | ||
ARG38-Side-NE | LIG209-Side-O4 | 38.3 | ||
ARG96-Side-NH2 | LIG209-Main-O | 12 | ||
ARG96-Side-NH2 | LIG209-Side-O4 | 11.2 | ||
iST2-1 (pose 2) | 0.40 ± 0.72 | THR86-Main-N | LIG209-Side-O2 | 10.3 |
Only interactions with a frequency greater than 10% are presented
The key residues are shown in bold