Table 5.
Binding free energies of the four top hit compounds and the control compound iST2-1 bound to the ST2 receptor estimated by MM/GBSA approach from the data of the last half trajectories of 100 ns MDs trajectories
Ligands | ΔEvdW (kcal/mol) | ΔEele (kcal/mol) | ΔGGB (kcal/mol) | ΔGSA (kcal/mol) | ΔGgas (kcal/mol) | ΔGsolv (kcal/mol) | ΔGbind (kcal/mol) |
---|---|---|---|---|---|---|---|
ZINC08911140 | − 17.79 ± 4.04 | − 236.52 ± 17.62 | 236.54 ± 14.39 | − 3.76 ± 0.37 | − 254.31 ± 16.53 | 232.78 ± 14.30 | − 21.53 ± 5.34 |
ZINC16933127 | − 25.19 ± 4.83 | − 531.06 ± 37.41 | 531.75 ± 32.14 | − 4.43 ± 0.38 | − 556.25 ± 36.56 | 527.32 ± 31.97 | − 28.93 ± 6.66 |
ZINC40658091 | − 23.98 ± 4.94 | − 316.28 ± 28.71 | 321.36 ± 24.14 | − 4.36 ± 0.76 | − 340.25 ± 28.37 | 317.00 ± 23.91 | − 23.25 ± 8.39 |
ZINC59514725 | − 17.28 ± 3.56 | − 541.44 ± 30.68 | 535.54 ± 27.00 | − 3.66 ± 0.24 | − 558.72 ± 29.65 | 531.88 ± 26.92 | − 26.84 ± 5.07 |
iST2-1 | − 11.56 ± 8.47 | 72.72 ± 32.41 | − 64.91 ± 28.76 | − 1.71 ± 1.25 | 61.16 ± 27.21 | − 66.62 ± 29.55 | − 5.46 ± 4.68 |