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. 2022 Jan 15;26(5):2659–2678. doi: 10.1007/s11030-021-10359-4

Table 5.

Binding free energies of the four top hit compounds and the control compound iST2-1 bound to the ST2 receptor estimated by MM/GBSA approach from the data of the last half trajectories of 100 ns MDs trajectories

Ligands ΔEvdW (kcal/mol) ΔEele (kcal/mol) ΔGGB (kcal/mol) ΔGSA (kcal/mol) ΔGgas (kcal/mol) ΔGsolv (kcal/mol) ΔGbind (kcal/mol)
ZINC08911140  − 17.79 ± 4.04  − 236.52 ± 17.62 236.54 ± 14.39  − 3.76 ± 0.37  − 254.31 ± 16.53 232.78 ± 14.30  − 21.53 ± 5.34
ZINC16933127  − 25.19 ± 4.83  − 531.06 ± 37.41 531.75 ± 32.14  − 4.43 ± 0.38  − 556.25 ± 36.56 527.32 ± 31.97  − 28.93 ± 6.66
ZINC40658091  − 23.98 ± 4.94  − 316.28 ± 28.71 321.36 ± 24.14  − 4.36 ± 0.76  − 340.25 ± 28.37 317.00 ± 23.91  − 23.25 ± 8.39
ZINC59514725  − 17.28 ± 3.56  − 541.44 ± 30.68 535.54 ± 27.00  − 3.66 ± 0.24  − 558.72 ± 29.65 531.88 ± 26.92  − 26.84 ± 5.07
iST2-1  − 11.56 ± 8.47 72.72 ± 32.41  − 64.91 ± 28.76  − 1.71 ± 1.25 61.16 ± 27.21  − 66.62 ± 29.55  − 5.46 ± 4.68